DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpa and MCM3

DIOPT Version :10

Sequence 1:NP_477185.1 Gene:dpa / 35679 FlyBaseID:FBgn0015929 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_199440.1 Gene:MCM3 / 834670 AraportID:AT5G46280 Length:776 Species:Arabidopsis thaliana


Alignment Length:811 Identity:231/811 - (28%)
Similarity:375/811 - (46%) Gaps:198/811 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 VVSQCKSKFKSFIMRFIDPSAEQDEISENIDVNQPLYLQKLEEIHTLEEPYLNLNCAHLKTFDQD 224
            |..:.:.:.|...::|:|                .:|:::::.:...:...|.:|.:.:....::
plant     3 VPEETRLRHKRDFIQFLD----------------SMYMEEIKALVHQKRHRLIINISDIHHHFRE 51

  Fly   225 LYRQLICYPQEVIPGFDMAINEMFFERYPAALLEHQIQVRPFN---ADKTRNMRSLNPEDMDQLI 286
            :..:::..|.|.:..|..|..|......|..|.|.::.:..|.   ..:....|.|..:.:..::
plant    52 VASRILKNPNEYMQSFCDAATEATRAIDPKYLKEGELVLVGFEGYFVSRVVTPRELLSDFIGSMV 116

  Fly   287 SISGMVIRSSNVIPEMREAFFSC------------NICSFS--TTVEV-----DRGR--INQPTL 330
            .:.|:|.:.|.|.|::.::...|            :|.|.:  .|..|     |:|.  :.:..|
plant   117 CVEGIVTKCSLVRPKVVKSVHFCPSTGEFTNRDYRDITSHAGLPTGSVYPTRDDKGNLLVTEYGL 181

  Fly   331 CTNCNTNHCFRLIHNRSEFTDKQLVKLQESPDDMAAGQTPHNVLLYAHNDLVDKVQPGDRVTVTG 395
            |                ::.|.|.:.:||.|::.|.||.|.:|.:.|.:||||..:|||||:|.|
plant   182 C----------------KYKDHQTLSIQEVPENAAPGQLPRSVDVIAEDDLVDSCKPGDRVSVFG 230

  Fly   396 IYRATPLKTGGLSSSVKSVYKTHVDVVHFRKVDNKRLYEDEEGKDHIFPPERVELLQLLAKKPDI 460
            ||:|.|.|:.|   ||..|::|.:       :.|.....::|....|:..:.::.::.:|::.|.
plant   231 IYKALPGKSKG---SVNGVFRTIL-------IANNIALLNKEANAPIYTKQDLDNIKNIARRDDA 285

  Fly   461 YDRLARAIAPSIYENDDIKKGILLQLFGGTKK--KHATLGRQNFRSEIHLLLCGDPGTSKSQMLQ 523
            :|.|||::|||||.:..|||.::|.:.||.:|  |:.|    :.|.:|::::.|||..:|||:|:
plant   286 FDLLARSLAPSIYGHAWIKKAVVLLMLGGVEKNLKNGT----HLRGDINMMMVGDPSVAKSQLLR 346

  Fly   524 YVFNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTGALVLADNGVCCIDEFDKMNDSTRSV 588
            .:.|:.|.:..|:|||||.|||||.||.|.||.:..|:.||:||||.|:.||||||||||..|..
plant   347 AIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADKGIVCIDEFDKMNDQDRVA 411

  Fly   589 LHEVMEQQTLSIAKAGIICQLNARTSILAAANPAESQWNKRKNIIDNVQLPHTLLSRFDLIFLVL 653
            :||||||||::||||||...||||.|::|||||....:::......|:.||.:|||||||:|:||
plant   412 IHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVL 476

  Fly   654 DPQDEIFDKRLASHLV----------------SLYYVTRHEEEDTMF------------------ 684
            |..|...|..::.|::                ||.|......|..||                  
plant   477 DQMDAGIDSMISEHVLRMHRYKNDRGEAGPDGSLPYAREDNAESEMFVKYNQTLHGKKKRGQTHD 541

  Fly   685 ---DMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGR---GQISAYPRQLESLIRLS 743
               .:..|:.||.||:..::|.|:|||.:|:.:||.|:|..|:..   |.:....|.||::|||:
plant   542 KTLTIKFLKKYIHYAKHRITPKLTDEASERIAEAYADLRNAGSDTKTGGTLPITARTLETIIRLA 606

  Fly   744 EAHAKVRLSNQVELLDVEEAWRL---------------------HREALKQSAT----------- 776
            .||||::||::|...|.|.|.:|                     .||..:|..|           
plant   607 TAHAKMKLSSEVTKADAEAALKLMNFAIYHQELTEMDDREQEERQREQAEQERTPSGRRGNQRRN 671

  Fly   777 -----------------DPL----------SGKI---------------------------DVGI 787
                             ||:          ||.:                           |:..
plant   672 NEDGAENDTANVDSETADPMEVDEPSVEQFSGTVSAARIETFERVFGQHMRTHRLDDISIADIET 736

  Fly   788 LTTGLSTAARKKRADLVAAIKENLKKKGKVL 818
            :.......|.:..||.:.|:.|.|:...||:
plant   737 VVNNNGVGASRYSADEIMALLEKLQDDNKVM 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpaNP_477185.1 PHA03307 2..>150 CDD:223039
MCM_N 165..267 CDD:464206 14/101 (14%)
MCM 270..772 CDD:214631 200/585 (34%)
MCM3NP_199440.1 MCM_N 12..95 CDD:464206 15/98 (15%)
MCM 100..634 CDD:475121 198/563 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.