DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpa and MCM9

DIOPT Version :10

Sequence 1:NP_477185.1 Gene:dpa / 35679 FlyBaseID:FBgn0015929 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_001318221.1 Gene:MCM9 / 815890 AraportID:AT2G14050 Length:651 Species:Arabidopsis thaliana


Alignment Length:656 Identity:185/656 - (28%)
Similarity:294/656 - (44%) Gaps:129/656 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 PSAEQDEISENIDVNQPLYLQKLEEIHTLEEPYLN----LNCAHLKTFDQDLYRQLICYPQEVIP 238
            |:...:.|....:.....|..:|.||....:|.|:    :..|.|...:..|.||:...|:..:.
plant     4 PTQTSEHIESMTEFLVKHYPDQLREISLSSDPKLHYPLFIEYAELVDDNPSLARQVFSDPEHYLR 68

  Fly   239 GFDMAINEMFFERYPAALLEHQ-------------------IQVRPFNADKTRNMRSLNPEDMDQ 284
            .||           .:|:|.|:                   |.|| .|...:...||  ||....
plant    69 QFD-----------DSAILAHKIALEHMKKFEEKIGIEKRFIHVR-INTSGSPLERS--PETFPS 119

  Fly   285 -----------LISISGMVIRSSNVIPEMREAFFSCNICSFSTTVEVDRGRIN---QPTLCTNCN 335
                       |:.:.|.||||..|.....|..:.|..|.....:..:...||   :|..|.:..
plant   120 IGRVRVKHRGILMMLKGTVIRSGAVKMYEGEKMYRCRKCKHMFPIFPELESINSIVKPPFCPSQR 184

  Fly   336 TNHC----FRLIHNRSEFTDKQLVKLQESPDDMAAGQTPHNVLLYAHNDLVDKVQPGDRVTVTGI 396
            :..|    |..:.:.....|.|.:|:||:...:..|..|.::|:...:||||.|:.||.|.|:||
plant   185 SKACEGTNFDPVDDTVTRHDYQEIKIQENTQVLGVGVIPRSILVVLKDDLVDNVKAGDDVVVSGI 249

  Fly   397 YRATPLKTGGLSSSVKSV------------------YKTHVDV------------VHFRKVDNKR 431
            .      |...|..:|.|                  .|:.:|:            .|||....| 
plant   250 L------TSKWSHDLKDVRCDLEPMLIANHVRRTNELKSEIDISDDLIEKFKNFWSHFRDTPLK- 307

  Fly   432 LYEDEEGKDHIFPPERVELLQLLAKKPDIYDRLARAIAPSIYENDDIKKGILLQLFGGTKKKHAT 496
                  |::.|.                      |.|.|.::....:|..:.|.|.||.  :|..
plant   308 ------GRNAIL----------------------RGICPQVFGLFTVKLAVALTLIGGV--QHVD 342

  Fly   497 LGRQNFRSEIHLLLCGDPGTSKSQMLQYVFNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQ 561
            ......|.|.||||.|||||.|||.|::...|..|:..|:|.||::.|||....||  ..:.:|:
plant   343 ASGTKVRGESHLLLIGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKD--GGEWMLE 405

  Fly   562 TGALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAESQW 626
            .|||||||.|:|||||||.|.:..|:.:||.||||::|:||||::..|:.:|.:..|.|| :.|:
plant   406 AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQSISVAKAGLVTTLSTKTIVFGATNP-KGQY 469

  Fly   627 NKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEED---TMFDMSV 688
            :..:::..|..|...||||||::.::||.::..:|..::||:::...:.:..|.|   |::.:.:
plant   470 DPDQSLSVNTALSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEVQIEQDREVDDLTTIWPLPM 534

  Fly   689 LRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLSEAHAKVRLSN 753
            |:.||.:.:::..|.||.||:: :|.:|..:::..:.........|.|||||||::|||::...|
plant   535 LQRYIQFVKKNFRPVLSKEAEE-IISSYYRLQRRSSTHNAARTTVRMLESLIRLAQAHARLMFRN 598

  Fly   754 QVELLD 759
            :|..||
plant   599 EVTRLD 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpaNP_477185.1 PHA03307 2..>150 CDD:223039
MCM_N 165..267 CDD:464206 22/111 (20%)
MCM 270..772 CDD:214631 162/541 (30%)
MCM9NP_001318221.1 Mcm2 6..616 CDD:440854 184/654 (28%)
MCM9 311..615 CDD:350666 112/322 (35%)
Blue background indicates that the domain is not in the aligned region.

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