DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpa and mcm4

DIOPT Version :10

Sequence 1:NP_477185.1 Gene:dpa / 35679 FlyBaseID:FBgn0015929 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_944595.2 Gene:mcm4 / 337598 ZFINID:ZDB-GENE-030131-9544 Length:845 Species:Danio rerio


Alignment Length:869 Identity:530/869 - (60%)
Similarity:666/869 - (76%) Gaps:29/869 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSPARSPSVGGATPKQGARTPTRGIASQDVETPMRMGPGRAVRPSD---NISLPPTSPGNISLP 62
            ||||:      ..:.|:...||    ||:|..:|    |.:..|..|   .:...||||...:..
Zfish     1 MSSPS------SQSRKRDPPTP----ASEDPLSP----PSQRSRAHDTSTELQPMPTSPAQDASL 51

  Fly    63 ATSPARGLGANMSEIDLSSPLNYGTPSSMGSIRTPRSGIRGTPLRARPDIRTDKRIRQVAIGGGS 127
            .:||........||||.||||.||||||... .||||||||||.|.|.|:.:.::..||      
Zfish    52 FSSPMAPRSVLQSEIDASSPLMYGTPSSRVE-GTPRSGIRGTPARQRADLGSVRKAPQV------ 109

  Fly   128 GLEPIPEKGSETTDPVSESSQAPQLVVWGTNVVVSQCKSKFKSFIMRFIDPSAEQDEISENIDVN 192
            .:...|..|....  ..:.....:||:|||:|.|..||.||:.|:.:|.||.:.::| :..:|:|
Zfish   110 DMHSEPASGDAAV--AGDQGAGQRLVIWGTDVNVGTCKEKFQRFLQQFTDPDSREEE-NAGLDLN 171

  Fly   193 QPLYLQKLEEIHTLEEPYLNLNCAHLKTFDQDLYRQLICYPQEVIPGFDMAINEMFFERYPAALL 257
            :|||:|||:||..:.||.||:||.|::|||.|||||||||||||||.|||::||:||:|:|.::|
Zfish   172 EPLYMQKLDEISVVGEPVLNVNCTHIQTFDADLYRQLICYPQEVIPTFDMSVNELFFDRFPDSVL 236

  Fly   258 EHQIQVRPFNADKTRNMRSLNPEDMDQLISISGMVIRSSNVIPEMREAFFSCNICSFSTTVEVDR 322
            ||||||||::|.||||||:|||||:||||:|||||||:|.:||||:||||.|.:|:|:|.|||||
Zfish   237 EHQIQVRPYSAIKTRNMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFRCQVCAFNTRVEVDR 301

  Fly   323 GRINQPTLCTNCNTNHCFRLIHNRSEFTDKQLVKLQESPDDMAAGQTPHNVLLYAHNDLVDKVQP 387
            |||.:|.:|.||||.|...|:||||.|:|||::||||||:||.||||||..::||||||||||||
Zfish   302 GRIAEPAVCRNCNTTHSMALVHNRSVFSDKQMIKLQESPEDMPAGQTPHTTVVYAHNDLVDKVQP 366

  Fly   388 GDRVTVTGIYRATPLKTGGLSSSVKSVYKTHVDVVHFRKVDNKRLYE-DEEGKDHIFPPERVELL 451
            ||||.:||||||.|::.....|.||||||||:|.:||||.|.|||:. ||:|:..:|..|||.||
Zfish   367 GDRVNITGIYRAAPMRLNPRQSQVKSVYKTHIDAIHFRKTDEKRLHGLDEDGEQKLFTKERVALL 431

  Fly   452 QLLAKKPDIYDRLARAIAPSIYENDDIKKGILLQLFGGTKKKHATLGRQNFRSEIHLLLCGDPGT 516
            :.||.|||:|:||:.|:||||||::||||||||||||||:|.....||.|||:|:::||||||||
Zfish   432 KELAAKPDVYERLSSALAPSIYEHEDIKKGILLQLFGGTRKDFTQTGRGNFRAEVNILLCGDPGT 496

  Fly   517 SKSQMLQYVFNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTGALVLADNGVCCIDEFDKM 581
            ||||:||||:|||||.|||||:|||||||||||.|||||||||||||||||:|||:|||||||||
Zfish   497 SKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKM 561

  Fly   582 NDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAESQWNKRKNIIDNVQLPHTLLSRF 646
            :|:|||||||||||||||||||||||||||||||||||||.|||||.:|..|:|:||||||||||
Zfish   562 SDNTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPVESQWNPKKTTIENIQLPHTLLSRF 626

  Fly   647 DLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEEDTMFDMSVLRDYIAYAREHLSPTLSDEAQQR 711
            |||||:||||||.:|:|||.|||||||.:..:.|:...||:||:||||:||..:.|.||:||.|.
Zfish   627 DLIFLMLDPQDEAYDRRLAHHLVSLYYQSEEQIEEEHLDMAVLKDYIAFARTTVHPRLSEEASQA 691

  Fly   712 LIQAYVDMRKVGAGRGQISAYPRQLESLIRLSEAHAKVRLSNQVELLDVEEAWRLHREALKQSAT 776
            ||:|||||||:|:|||.:|||||||||||||:|||||||.|.:||.:|||||.||||||||||||
Zfish   692 LIEAYVDMRKIGSGRGMVSAYPRQLESLIRLAEAHAKVRFSGKVETIDVEEAKRLHREALKQSAT 756

  Fly   777 DPLSGKIDVGILTTGLSTAARKKRADLVAAIKENLKKKGKVLTVPYQKLFSDIKEGSQIMITREQ 841
            ||.:|.:|:.|||||:|..|||::.::..|:|:.::.|||...:.||:||.|::..|:..||::.
Zfish   757 DPRTGFVDISILTTGMSATARKRKEEVAQALKKLIQSKGKTPAMKYQQLFDDLRGQSEAAITKDM 821

  Fly   842 FEDALKEVQDEGAIVVMGKNTIRI 865
            |::||:.:.||..:.|.|| |:|:
Zfish   822 FDEALRLLADEDYLTVTGK-TVRL 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpaNP_477185.1 PHA03307 2..>150 CDD:223039 50/150 (33%)
MCM_N 165..267 CDD:464206 61/101 (60%)
MCM 270..772 CDD:214631 367/502 (73%)
mcm4NP_944595.2 PHA03307 1..>131 CDD:223039 51/152 (34%)
MCM_N 145..246 CDD:464206 61/101 (60%)
MCM 249..752 CDD:214631 367/502 (73%)

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