DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpa and Mcm5

DIOPT Version :9

Sequence 1:NP_001286160.1 Gene:dpa / 35679 FlyBaseID:FBgn0015929 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_038953490.1 Gene:Mcm5 / 291885 RGDID:1306616 Length:734 Species:Rattus norvegicus


Alignment Length:752 Identity:241/752 - (32%)
Similarity:387/752 - (51%) Gaps:101/752 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 DPVSESSQAPQLVVWGTNVVVSQCKSKFKSFIMRFIDPSAEQDEISENIDVNQP----LYLQKLE 201
            ||.:|..||.:          |..:.:||.|:.::            .:..::.    .|..:|:
  Rat    18 DPGAEEGQARK----------SHLQKRFKEFLRQY------------RVGTDRTGFTFKYRDELK 60

  Fly   202 EIHTLEEPYLNLNCAHLKTFDQDLYRQLICYPQEVIPGFDMAINEMFFE----RYPAALLEHQIQ 262
            ..:.|.|.::.:....|.:||::|...|...|.|.:...:.|..|:..|    |.....|...||
  Rat    61 RHYNLGEYWIEVEMEDLASFDEELADYLYKQPAEHLQLLEEAAKEVADEVTRPRPAGDELLQDIQ 125

  Fly   263 VRPFNADKTRNMRSLNPEDMDQLISISGMVIRSSNVIPEMREAFFSCNICSFSTTVEVDRGRINQ 327
            |...:.....::|.|..:.|..|:.|.|::|.:|.|..:.......|..|..:.|....|..:..
  Rat   126 VMLKSDASPSSIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTNIAMRPGLEG 190

  Fly   328 PTLCTNCNTNHCFR---------LIHNRSEFTDKQLVKLQESPDDMAAGQTPHNVLLYAHNDLVD 383
            ..|...||.:...|         ::.::.:..|.|.:||||.||.:..|:.|.::.||....|.|
  Rat   191 YALPRKCNMDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCD 255

  Fly   384 KVQPGDRVTVTGIYRATPLKTGGLSSS---------VKSVYKTHVDVVHFRKVDNKRLYEDEEGK 439
            ||.||:|||:.|||   .:|..|::.|         ::|.|   :.|:        .:..|.:|.
  Rat   256 KVVPGNRVTIMGIY---SIKKFGMNPSKGRDRVGVGIRSSY---IRVL--------GIQVDTDGS 306

  Fly   440 DHIF----PPERVELLQLLAKKPDIYDRLARAIAPSIYENDDIKKGILLQLFGGTKKKHAT-LGR 499
            ...|    .|:..|..:.||..|:||:.::|:::|||:...|:||.|...||||::|:... |.|
  Rat   307 GRSFAGSVSPQEEEEFRRLAALPNIYELVSRSVSPSIFGGMDMKKAIACLLFGGSRKRLPDGLTR 371

  Fly   500 QNFRSEIHLLLCGDPGTSKSQMLQYVFNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTGA 564
               |.:|:||:.|||||:|||:|::|....|...||||:||||.||||.|.:||.:|..:::.||
  Rat   372 ---RGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIRDPSSRNFIMEGGA 433

  Fly   565 LVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAESQWNKR 629
            :||||.||.||||||||.:..|..:||.|||||:|||||||...||:|.|:|||||....:|::.
  Rat   434 MVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDET 498

  Fly   630 KNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYY--VTRHEEEDTMFDMSVLRDY 692
            |. .||:....|:|||||:||:|.|..:|..|..||.|:::|:.  :|:.:..:...|::.::.:
  Rat   499 KG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVITLHVSALTQTQAVEGEIDLAKMKKF 562

  Fly   693 IAYAREHLSPTLSDEAQQRLIQAYVDMRKVGA--------GRGQISAYPRQLESLIRLSEAHAKV 749
            |||.|....|.||.||.::|...|:.||. ||        .|..|....||||:::|::||.:|:
  Rat   563 IAYCRARCGPRLSAEAAEKLKNRYIIMRS-GARQHERDIDRRSSIPITVRQLEAIVRIAEALSKM 626

  Fly   750 RLSNQVELLDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADLVAAIKENLKKK 814
            :|.......|||||.||.:.:...:|   |||.:      :|:.....::..::::.|::.||::
  Rat   627 KLQPFATEADVEEALRLFQVSTLDAA---LSGNL------SGVEGFTTQEDQEMLSRIEKQLKRR 682

  Fly   815 GKVLTVPYQKLFSDIKEGSQIM-ITREQF-EDALKEV 849
            ..:        .|.:.|.|.:. .|:::: |.|:::|
  Rat   683 FAI--------GSQVSEHSIVQDFTKQKYPEHAIRKV 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpaNP_001286160.1 PHA03307 2..>150 CDD:223039 4/8 (50%)
MCM_N 168..267 CDD:379644 22/106 (21%)
MCM 270..772 CDD:214631 198/534 (37%)
Mcm5XP_038953490.1 MCM_N 32..129 CDD:405270 22/108 (20%)
MCM 133..649 CDD:214631 198/534 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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