DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpa and mcm5

DIOPT Version :10

Sequence 1:NP_477185.1 Gene:dpa / 35679 FlyBaseID:FBgn0015929 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_001342928.1 Gene:mcm5 / 2542477 PomBaseID:SPAC1B2.05 Length:720 Species:Schizosaccharomyces pombe


Alignment Length:749 Identity:234/749 - (31%)
Similarity:370/749 - (49%) Gaps:119/749 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 KSKFKSFIMRFIDPSAEQDEISENIDVNQPLYLQKLEEIHTLEEPYLNLNCAHLKTFDQDLYRQL 229
            :..|..||..|:            || |..:|..:|.:...:::..||::..||.::::||...|
pombe    31 EKNFIQFIEEFV------------ID-NDFIYRTQLRDNLVVKQYMLNIDLRHLISYNEDLAHLL 82

  Fly   230 ICYPQEVIPGFDMAI-----------NEMFFERYPA--ALLEHQIQVRPFNADKTRNMRSLNPED 281
            :..|.:::|.|:.|:           .|......|.  ..|.:...:.|        :|:|....
pombe    83 LSQPTDILPLFESAVTTVAKRLLYRSQENASTNIPTCQVTLRYDANILP--------IRNLTASH 139

  Fly   282 MDQLISISGMVIRSSNVIPEMREAFFSCNICSFSTTVEVDRG--RINQPTLC----TNCNTNHC- 339
            :.:|:.:.|::|.:|.:..........|..|..:..:::..|  .:..|.:|    .:.....| 
pombe   140 ISKLVRVPGIIIGASTLSCRATALHLVCRNCRATRILQISGGFSGVQLPRVCEAPVLDGEKKDCP 204

  Fly   340 ---FRLIHNRSEFTDKQLVKLQESPDDMAAGQTPHNVLLYAHNDLVDKVQPGDRVTVTGIYRATP 401
               |.:.|::|.|.|:|::||||:||.:..|:.|.::||.|...|.:::.||.|..:|||:....
pombe   205 MDPFIIDHSKSTFIDQQVLKLQEAPDMVPVGELPRHILLNADRYLTNQITPGTRCVITGIFSIFQ 269

  Fly   402 LKTGGLSSSVKSVYKTHVDVVHFRKVDNKRLYEDEEGKDHIFPPERVELLQLLAKKPDIYDRLAR 466
            .|:...|.:| ::...::.||..:...|     |......:|..|..|....:::.|::||.::.
pombe   270 NKSVKASGAV-AIRNPYIRVVGIQMDSN-----DGSKSTPLFSEEEEEEFLEISRTPNLYDIISN 328

  Fly   467 AIAPSIYENDDIKKGILLQLFGGTKKKHATLGRQNFRSEIHLLLCGDPGTSKSQMLQYVFNLVPR 531
            :|:|:||.|.||||.|...||.|:||  ........|.:|::||.|||||:|||.|::|..|.|.
pombe   329 SISPAIYGNVDIKKAIACLLFSGSKK--ILPDGMRLRGDINVLLLGDPGTAKSQFLKFVERLAPI 391

  Fly   532 SQYTSGRGSSAVGLTAYVTKDPETRQLVLQTGALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQ 596
            :.||||:||||.||||.:.:|..||:..|:.||:||||.|:.||||||||.|..|..:||.||||
pombe   392 AVYTSGKGSSAAGLTASIQRDSVTREFYLEGGAMVLADGGIVCIDEFDKMRDEDRVAIHEAMEQQ 456

  Fly   597 TLSIAKAGIICQLNARTSILAAANPAESQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFD 661
            |:|||||||...||:|||:||||||...:::..|...:|:....|:|||||:||:|.|..||..|
pombe   457 TISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTILSRFDMIFIVKDEHDETKD 521

  Fly   662 KRLASHLVSLYYVTRHEEEDTM------FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMR 720
            :.:|.|:::| :....|..:|:      ||.  .|.||.|.|...:|.|..||.::|...:|.:|
pombe   522 RNIARHVINL-HTNLQESSETLAIGEIPFDK--FRRYINYCRHKCAPNLDAEAAEKLSSQFVAIR 583

  Fly   721 K-------VGAGRGQISAYPRQLESLIRLSEAHAKVRLSNQVELLDVEEAWRLHREALKQSATDP 778
            |       ....|..|....||||::||::|:.||:.||.........||.||            
pombe   584 KRVHQSEQDSNSRSTIPITVRQLEAIIRITESLAKMSLSPIASEAHATEAIRL------------ 636

  Fly   779 LSGKIDVGILTTGLSTAARK--KRADLVAAIKENLKKKGKVLTVPYQKLFSDIKEGSQIMITRE- 840
                    .||:.|:.|.:.  :..:.|..|:.:|:|:   |.:.:|        .|..|:.|| 
pombe   637 --------FLTSTLAAATQSSPEVTEEVKKIEASLRKR---LPIGFQ--------ASYRMLIREY 682

  Fly   841 ---------QFEDALKEVQDEGAIVVMGKNTIRI 865
                     ..|.||:        ::..|.||::
pombe   683 VNGHGYSQHALEMALQ--------ILSSKETIQL 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpaNP_477185.1 PHA03307 2..>150 CDD:223039
MCM_N 165..267 CDD:464206 24/114 (21%)
MCM 270..772 CDD:214631 190/524 (36%)
mcm5NP_001342928.1 MCM_N 34..124 CDD:464206 22/102 (22%)
MCM 128..642 CDD:214631 193/552 (35%)
Blue background indicates that the domain is not in the aligned region.

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