DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpa and mcm2

DIOPT Version :9

Sequence 1:NP_001286160.1 Gene:dpa / 35679 FlyBaseID:FBgn0015929 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_775364.2 Gene:mcm2 / 192338 ZFINID:ZDB-GENE-020419-24 Length:889 Species:Danio rerio


Alignment Length:921 Identity:277/921 - (30%)
Similarity:433/921 - (47%) Gaps:165/921 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ARTPTRGIASQDVETPMRMGPGRAVRPSDNIS---LPPTSPGNIS-----------------LPA 63
            |.:||||....|:.:    .|||.:.|.::.|   |..|.|....                 :|.
Zfish    11 ATSPTRGSRRGDLTS----SPGRDLPPFEDESEGLLGDTLPDEEDDDGEELIGDAMERDYRVIPE 71

  Fly    64 TSPARGLGANMSEIDLS--SPLNYGTPSSMGSIRTPRSGI------RGT--PLRARPDIRTDKRI 118
            .......|.:..| |||  ||.......:....|....|:      ||.  ......|.|..||.
Zfish    72 LDRYEAEGLDEDE-DLSELSPSARAEAEAAMRRRDREQGLGMGRIGRGLLYDSEDEDDKRPTKRQ 135

  Fly   119 RQVA--IGGGSGLEPIPEKGSETTDPVSE----------SSQAPQLVVWGTNVVVSQCKSKFKSF 171
            |.:|  ...|..:|...|:..|:.:.:.:          |..||:|.::          .:||:|
Zfish   136 RVLAERAAEGGAMEGEDEEMIESIENLEDMKGHTVREWVSMAAPRLEIY----------HRFKNF 190

  Fly   172 IMRFIDPSAE---QDEISENIDVNQPLYLQKLEEIHTLEEPYLNLNCAHLKTFDQDLYRQLICY- 232
            :...:|....   ::.||:....|:...|...||:.:.|                    .::.| 
Zfish   191 LRTHVDEHGHNVFKERISDMCKENKESLLVNYEELASRE--------------------HVLAYF 235

  Fly   233 ----PQEVIPGFDMAINEMFFERYPA-ALLEHQIQVRPFNADKTRNMRSLNPEDMDQLISISGMV 292
                |.|::..||.|..|:....||. ..:.|:|.||..|......:|||....::|||..||:|
Zfish   236 LPEAPAEMLKIFDEAAKEVVLAMYPKYDRIAHEIHVRIGNLPLVEELRSLRQLHLNQLIRTSGVV 300

  Fly   293 IRSSNVIPEMREAFFSCNICSF-------STTVEVDRGRINQPTLCTNCNTNHCFRLIHNRSEFT 350
            ...:.|:|::....::||.|:|       |...||      :|..|..|.:...|.:...::.:.
Zfish   301 TSCTGVLPQLGMVKYNCNKCNFILGPFFQSQNQEV------KPGSCPECQSLGPFEINMEQTVYQ 359

  Fly   351 DKQLVKLQESPDDMAAGQTPH--NVLLYAHNDLVDKVQPGDRVTVTGIYRATPLKTGGLS-SSVK 412
            :.|.:.:||||..:|||:.|.  :.:|.|  ||||..:|||.:.:||||...  ..|.|: ::..
Zfish   360 NYQRITIQESPGKVAAGRLPRSKDAILLA--DLVDMCKPGDEIELTGIYHNN--YDGSLNMANGF 420

  Fly   413 SVYKTHVDVVHFRKVDNKRLYEDEEGKDHIFPPERVELLQLLAKKPDIYDRLARAIAPSIYENDD 477
            .|:.|.:...|..:.|......:...:|       |:.:..|:|...|.:|:..:|.||||.::|
Zfish   421 PVFATVILANHIARKDEGVAVAELTDED-------VKAIVALSKDERIGERIFASIGPSIYAHED 478

  Fly   478 IKKGILLQLFGGTKKKHATLGRQNFRSEIHLLLCGDPGTSKSQMLQYVFNLVPRSQYTSGRGSSA 542
            ||:|:.|.||||..|...  |:...|.:|::||||||||:|||.|:||..:..|:.:|:|:|:||
Zfish   479 IKRGLALALFGGEAKNPG--GKHKVRGDINVLLCGDPGTAKSQFLKYVEKVASRAVFTTGQGASA 541

  Fly   543 VGLTAYVTKDPETRQLVLQTGALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIIC 607
            |||||||.:.|.:|:..|:.|||||||.|||.|||||||||..|:.:||.||||::||:||||:.
Zfish   542 VGLTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVT 606

  Fly   608 QLNARTSILAAANPAESQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLY 672
            .|.||.:::|||||...:::......:||.|...::||||::.:|.|..|.:.|:.||..:|. .
Zfish   607 SLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIISRFDVLCVVRDTVDPVQDEMLARFVVG-S 670

  Fly   673 YVTRHE----------EEDTM---FDM-----SVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDM 719
            ::..|.          ||..:   ||:     .:||.||.||:|.:.|.|:...|.::.:.|.|:
Zfish   671 HIKHHPSNKEGGVAGLEEVVLPNTFDVPPIPQELLRKYIIYAKERVRPKLNQMDQDKVARIYSDL 735

  Fly   720 RKVGAGRGQISAYPRQLESLIRLSEAHAKVRLSNQVELLDVEEAWRLHREALKQSATDPLSGKID 784
            ||.....|.|....|.:||:||::||||::.|.:.|...||..|.|:..|:.           ||
Zfish   736 RKESMATGSIPITVRHIESMIRMAEAHARMHLRDYVLEDDVNMAIRVMLESF-----------ID 789

  Fly   785 V---GILTTGLST-----AARKKRADLVAAIKENLKKKGKVLTVPYQKLFSDIKEGSQIMITREQ 841
            .   .::.:...|     |.|:...:|:..|.:.|..:    .|.||:    .:.|:|    ::.
Zfish   790 TQKFSVMRSMRKTFARYLAFRRDNNELLLFILKQLVSE----QVSYQR----NRYGAQ----QDT 842

  Fly   842 FEDALKEVQDE 852
            .|.|.|::.|:
Zfish   843 IEIAEKDLVDK 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpaNP_001286160.1 PHA03307 2..>150 CDD:223039 37/172 (22%)
MCM_N 168..267 CDD:379644 24/107 (22%)
MCM 270..772 CDD:214631 195/529 (37%)
mcm2NP_775364.2 MCM2_N 57..170 CDD:289392 22/113 (19%)
MCM_N 186..298 CDD:291233 31/131 (24%)
MCM 279..788 CDD:214631 195/539 (36%)
P-loop_NTPase 506..645 CDD:304359 74/138 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54431
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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