DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpa and mcm-3

DIOPT Version :9

Sequence 1:NP_001286160.1 Gene:dpa / 35679 FlyBaseID:FBgn0015929 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_506706.1 Gene:mcm-3 / 180010 WormBaseID:WBGene00003155 Length:812 Species:Caenorhabditis elegans


Alignment Length:679 Identity:220/679 - (32%)
Similarity:332/679 - (48%) Gaps:113/679 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 KSKFKSFIMRFIDPSAE----QDEISENIDVNQPLYLQKLEEIH---------TLEEPYLNLNCA 216
            |.:.....:.|:|..|:    :.:|.:.::..:...:..|:||.         .|.:..|.:||.
 Worm    18 KQEITEQYLNFLDNQADTFHYRQKIVKMMNDGESRLVMNLDEIREILPERAEGLLTQSVLEMNCL 82

  Fly   217 HLKTFDQDLYRQLICYPQEVI-PGFDMAINEMFFERYPAALLEHQIQVRPFNADKTRNMRSLNPE 280
            . ......:.|..:   |.|: .||.:.....|.||:.                   |.|:|...
 Worm    83 Q-SALQMAINRSDV---QAVVKTGFHVGFEGTFGERHV-------------------NPRTLKSS 124

  Fly   281 DMDQLISISGMVIRSSNVIPEMREAFFSC---------NICSFSTTVEVDRGRINQPTLCTNCNT 336
            .:..|:...|:|.:.|.|..::..:...|         ....| |.::......|.||...|.|.
 Worm   125 YLGNLVCCEGIVTKCSTVRQKLLTSVHYCPATNKVLEKKFADF-TMLDTAVTNNNYPTEDENKNP 188

  Fly   337 NHCFRLIHNRSEFTDKQLVKLQESPDDMAAGQTPHNVLLYAHNDLVDKVQPGDRVTVTGIYRATP 401
               .......|.:.|.|...:||.|:...|||.|..|...|..||.|:|:|||||.:.|::|..|
 Worm   189 ---LETEFGHSVYKDHQTFTIQELPESAPAGQLPRAVDCVADLDLADRVKPGDRVRIIGVFRVLP 250

  Fly   402 LKTGGLSS-SVKS-VYKTHVDVVHFRKVDNKRLYEDEEGKDHIFPPERVELLQLLAKKPDIYDRL 464
            .|..|:|| |.:| :...|:.::....:.|             |.|:.|:.::.::|..:.::.|
 Worm   251 NKQNGVSSGSFRSIIIINHIQMLSKEVIPN-------------FEPQDVKDVRKISKSRNPFELL 302

  Fly   465 ARAIAPSIYENDDIKKGILLQLFGGTKKKHATLGRQNFRSEIHLLLCGDPGTSKSQMLQYVFNLV 529
            ||::||||..:::.||.:|..|.||.:|  ........|.:|::||.|||..:|||:|:||..:.
 Worm   303 ARSLAPSICGHEETKKALLCLLLGGMEK--ILNNGSRLRGDINVLLIGDPSVAKSQLLRYVLRMA 365

  Fly   530 PRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTGALVLADNGVCCIDEFDKMNDSTRSVLHEVME 594
            ||:..|:|||||.|||||.||.||::.:..|:.||:||||.||.||||||||:|..|:.:|||||
 Worm   366 PRAITTTGRGSSGVGLTAAVTTDPDSGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVME 430

  Fly   595 QQTLSIAKAGIICQLNARTSILAAANPAESQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEI 659
            |..::|:||||..:||||.|:||||||...::|..|:.::|:.:..:|||||||||::||..|..
 Worm   431 QGRVTISKAGIHAKLNARCSVLAAANPVYGRYNPFKSPMENIGMQDSLLSRFDLIFVLLDEHDAD 495

  Fly   660 FDKRLASHLVSLY-YVTRHE------------------------------EEDT---------MF 684
            .|..:|.|::.|: |.|:.|                              ||:|         :.
 Worm   496 KDANVAEHVLKLHTYRTQGEADGTVLPMGGGVETISTINMETKKASSSIYEENTQWAGIQDTKIL 560

  Fly   685 DMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGR-GQISAYP---RQLESLIRLSEA 745
            .|..:|.||..||. :.|.|:|||.:.:.:.|.|:|.....: .|....|   ||||:|||||.|
 Worm   561 TMDFMRKYIHLARS-VQPKLTDEATEYISEVYADIRSFDITKTDQERTMPVTARQLETLIRLSTA 624

  Fly   746 HAKVRLSNQVELLDVEEAWR-LHREALKQ 773
            .||.|.|.:||..|.|:|:. ||....|:
 Worm   625 IAKARFSKKVEREDTEKAYNLLHFACFKE 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpaNP_001286160.1 PHA03307 2..>150 CDD:223039
MCM_N 168..267 CDD:379644 19/112 (17%)
MCM 270..772 CDD:214631 199/557 (36%)
mcm-3NP_506706.1 MCM_N 25..109 CDD:379644 16/87 (18%)
MCM 114..649 CDD:214631 200/573 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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