DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1620 and mideasb

DIOPT Version :9

Sequence 1:NP_001260777.1 Gene:CG1620 / 35678 FlyBaseID:FBgn0033183 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_009291493.1 Gene:mideasb / 560411 ZFINID:ZDB-GENE-131121-13 Length:1095 Species:Danio rerio


Alignment Length:610 Identity:119/610 - (19%)
Similarity:195/610 - (31%) Gaps:208/610 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 RERRKSPATSSDNNSTSV----QPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEEEALADMEA 97
            ::::||..:..:.::..|    |.|.:|..:    ...|::.....:..|.::...:|::....|
Zfish   326 QQQQKSEQSHQNQHALGVYSDGQQPHAPLLN----QHHPSLSGQSQETTDPSSTQAQESVPQPPA 386

  Fly    98 HSAEDEIATLREESEMP---IEELLAKYGGTAASP----------AMSSSNRSG----------- 138
            ..::..|     |::.|   ....|:|.||..||.          |..|.|.:.           
Zfish   387 AVSQQAI-----ETQQPGPRRSRRLSKEGGGPASDNPFVIPSDLHAQGSQNGASETSMVQDIRAA 446

  Fly   139 -----SSSRRARRATKRQYQELDTEMAHTSTSTSSSTSQLEKH----------------DGIDQE 182
                 .|:||.||.::....|...:.|....|..|...:.|.|                ..:||.
Zfish   447 PTGVIQSTRRKRRVSQEANLETLAQKASERESLPSRNVKQEPHRPWSPPVVPTGPGRGAAEVDQV 511

  Fly   183 EEPKEEADKL-------ASPPESGEASSVDTEDAQKYEGIKKQHRSHLLDLYP-DESFVDLAPT- 238
            ...:...|.|       :.|....::||.|.|.|.         .|....|.| |.|..:..|: 
Zfish   512 SAKRPRDDSLMPLVIPVSVPVRQTDSSSPDHEQAS---------LSVSWPLRPSDMSCSNYQPSV 567

  Fly   239 --CGEETERFTPLQTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGL------------ 289
              ....:.|.:|.::......||...|::|:...|::         ...||.|            
Zfish   568 IVTRRRSLRNSPSESTGQNGGAESGSEADSKSAKAKR---------RPRPEPLFIPPPKLGTFIA 623

  Fly   290 -SQYGDILPYENE----DQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGS--------ETTAG 341
             ..|..|.|:::.    .:|:..|..:........|:.::|         ||        ...|.
Zfish   624 PPAYSSITPFQSHLRSPVRLVDNPLNMPPYTPPPILSPVRE---------GSGLYFSTFLSAAAA 679

  Fly   342 EEGAATGATIEPPA---------------PITAP-------ATP----PR--------------- 365
            ...||....:.|||               .||.|       |||    ||               
Zfish   680 AAAAANNQVLPPPATPKSATRSLLRSNSSDITPPVLSAISEATPVSIEPRINIGVRYQAEVPELR 744

  Fly   366 ----------------APLA-TSGAGDQELVVKD----------------NEQALHLLVQCGYDF 397
                            |||. ...:..|:..|.|                .|.|:|.|.:|..|.
Zfish   745 ERSAALHDLHKAELVWAPLPDLEASAQQQQKVNDLMHLACSSALFGGGTNQELAMHCLYECKGDI 809

  Fly   398 KEALRR--KRMNVL----PLTD----TMSSWSEDECLKFEEGIQRFGKDFYQIRQNQVRTRTMRE 452
            ...|..  .:.|:.    ||.|    ...||:.:|...|.:||..:.|||:.: |..|.::|:.:
Zfish   810 MGTLTHLLLKKNIFSKSHPLADYHYSGSDSWTPEERRLFNKGIATYKKDFFMV-QKLVSSKTVAQ 873

  Fly   453 LVHFYYLWKKSER--RDQSFALNDT 475
            .|.|||.:||..:  |:.:....:|
Zfish   874 CVEFYYTYKKQVKIGRNGTLVYGET 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1620NP_001260777.1 ELM2 275..320 CDD:279754 8/61 (13%)
SANT 417..463 CDD:197842 17/45 (38%)
SANT_MTA3_like 417..462 CDD:212559 16/44 (36%)
mideasbXP_009291493.1 ELM2 730..785 CDD:279754 6/54 (11%)
SANT 838..883 CDD:197842 16/45 (36%)
SANT 839..883 CDD:304392 16/44 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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