DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1620 and RCOR3

DIOPT Version :9

Sequence 1:NP_001260777.1 Gene:CG1620 / 35678 FlyBaseID:FBgn0033183 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_016857247.1 Gene:RCOR3 / 55758 HGNCID:25594 Length:586 Species:Homo sapiens


Alignment Length:443 Identity:86/443 - (19%)
Similarity:153/443 - (34%) Gaps:117/443 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SQHSASEASADSGSLANSDLAVTPTKRERRKSPATSSDNNSTSVQPPMSPSSSVADTTFEPTIDM 75
            |.|..|.||..:|       .:..||       .|..||....|   .||..|:.|.    .:|.
Human    93 SSHPPSLASQSAG-------IIGATK-------YTDKDNGGMLV---WSPYHSIPDA----KLDE 136

  Fly    76 MVNDFDDEATLNEEEALADM--EAHSAEDEIATLRE----------ESEMPIEELLAKYG----- 123
            .:....::...|.|:||..:  ..|:.|..:|.|..          |.::..|:..:.:|     
Human   137 YIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHR 201

  Fly   124 -------GTAASPA------MSSSNRSGSSSRRARRATKRQYQELDTEMAHTSTSTSSSTSQLEK 175
                   .|.||..      ..:.:|:....|:||:...|          |....:.....:...
Human   202 IQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR----------HNQGDSDDDVEETHP 256

  Fly   176 HDGIDQEEEPKEEADKLASPPESGEASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFV-----DL 235
            .||.|.:.:||:||.|..:..:..:.|.:.. ..::|:.::.:|.|......|.:...     .:
Human   257 MDGNDSDYDPKKEAKKEGNTEQPVQTSKIGL-GRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVV 320

  Fly   236 APTCGEETERFTPLQTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPE------------- 287
            |.:|..........|...:.:..:.:.::..:::.|.|..|.|...:.:.||             
Human   321 AVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEE 385

  Fly   288 ------GLSQYG-------DILPYE----------------NEDQLI--WEPSQVSEREVEEYLA 321
                  |:.:||       |::..:                |.::::  ||..|.::....:...
Human   386 QLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDAST 450

  Fly   322 KIQETRSIVPPDDGSETTAGEEGAATGA--TI--EPPAPITAPATPPRAPLAT 370
            ..:||:|......|..|...||.....|  |:  .||||.:.|.  |.||:||
Human   451 LGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPT--PTAPIAT 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1620NP_001260777.1 ELM2 275..320 CDD:279754 12/88 (14%)
SANT 417..463 CDD:197842
SANT_MTA3_like 417..462 CDD:212559
RCOR3XP_016857247.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.