DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1620 and rcor2

DIOPT Version :9

Sequence 1:NP_001260777.1 Gene:CG1620 / 35678 FlyBaseID:FBgn0033183 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_991201.1 Gene:rcor2 / 402934 ZFINID:ZDB-GENE-040426-1812 Length:536 Species:Danio rerio


Alignment Length:284 Identity:71/284 - (25%)
Similarity:108/284 - (38%) Gaps:93/284 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 AEEEEESESELDDARKIIMVGHDYQAEIPE----GLSQYGDILPYENEDQLIWEP-SQVSEREVE 317
            :|||...|...:|:  :|.||.||||:|||    ..|:||:   .:....|:|.| ||||:..::
Zfish    25 SEEESSDEEHPNDS--MIRVGGDYQAQIPEFKPDCASRYGE---KDQRSMLVWSPNSQVSDAMLD 84

  Fly   318 EYLAKIQETRSIVPPDDGSETTAGEEGAATGATIEPPAPITAPATPPRAPLATSGAGDQELVVKD 382
            ||:...:|....                                                    :
Zfish    85 EYILMAKEKHGY----------------------------------------------------N 97

  Fly   383 NEQALHLLVQCGYDFKEALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQIRQNQVRT 447
            .||||.:|:...:|.:::| ....|..|..|   .|:.::.:.||:.....||.|::|:| .:..
Zfish    98 MEQALGMLLWHKHDVEKSL-ADLANFTPFPD---EWTVEDKVLFEQAFSFHGKSFHRIQQ-MLPD 157

  Fly   448 RTMRELVHFYYLWKKSERRD-----QSFAL---------NDTIDH------MDVFIN------EA 486
            :.:..||.:||.|||:..|.     |:..|         ||.|:.      .|..||      :.
Zfish   158 KMITSLVKYYYSWKKTRTRTSVMDRQARKLLSKREKNESNDEIEEGDPGSDSDFEINAKKESAKQ 222

  Fly   487 GGGNGSGNGNGAGIVSGTANSNGS 510
            ..|||.||..|......|...|.|
Zfish   223 NSGNGGGNEKGPSKSCLTRKENQS 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1620NP_001260777.1 ELM2 275..320 CDD:279754 21/49 (43%)
SANT 417..463 CDD:197842 14/45 (31%)
SANT_MTA3_like 417..462 CDD:212559 13/44 (30%)
rcor2NP_991201.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..44 7/20 (35%)
ELM2 40..92 CDD:279754 22/54 (41%)
SANT 127..173 CDD:197842 15/49 (31%)
SANT 128..172 CDD:304392 13/44 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..264 17/68 (25%)
SANT 332..377 CDD:197842
Myb_DNA-binding 332..375 CDD:278669
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..536
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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