DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1620 and Mier1

DIOPT Version :9

Sequence 1:NP_001260777.1 Gene:CG1620 / 35678 FlyBaseID:FBgn0033183 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_017448862.1 Gene:Mier1 / 313418 RGDID:1562337 Length:698 Species:Rattus norvegicus


Alignment Length:552 Identity:173/552 - (31%)
Similarity:254/552 - (46%) Gaps:139/552 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 SSSVADTTFEPTIDMMVNDFDDEATLNEEEALADMEAHSAEDEIATLREESEMPIEELLAKYGGT 125
            |::..|..|:|:.||:|:|||||.||.|||.:......|:  ||..|..|.:|||:|||:.||  
  Rat   200 SAASEDHEFDPSADMLVHDFDDERTLEEEEMMEGETNFSS--EIEDLAREGDMPIDELLSLYG-- 260

  Fly   126 AASPAMSSSNRSGSSSRRARRATKRQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEAD 190
                                                     ..||.||.:.:..::|||.:.|.|
  Rat   261 -----------------------------------------YGSTVQLPEEEEEEEEEEEEGEDD 284

  Fly   191 KLASPPE----SGEASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTCGEETERFTPLQT 251
            :.|...:    |||....:.:|:   .|.:.:.:|...|  |.:|.     |..:..|...|.:.
  Rat   285 EDADNDDNSGCSGENKEENIKDS---SGQEDETQSSNDD--PSQSV-----TSQDAQEIIRPRRC 339

  Fly   252 LFDEVEAEEEEESESELD-----DARKIIMVGHDYQAEIPEGLSQYGD-ILPYENEDQLIWEPSQ 310
            .:.:..:|.|||||.:.|     |.:|.||||..:|||||.|:.:|.: ...|||:|||:|:|  
  Rat   340 KYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGVCRYKENEKVYENDDQLLWDP-- 402

  Fly   311 VSEREVEEYLAKIQETRSIVPPDDGSETTAGEEGAATGATIEPPAPITAPATPPRAPLATSGAGD 375
                   |||   .|.:.||...|.|..|..|:|              ..|.|..:.        
  Rat   403 -------EYL---PEDKVIVFLKDASRRTGDEKG--------------VEAIPEGSH-------- 435

  Fly   376 QELVVKDNEQALHLLVQCGYDFKEALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQI 440
                :|||||||:.||:|.:|.:|||||.|.||....:.:|.|:|:||..||:|::.:||||:.|
  Rat   436 ----IKDNEQALYELVKCSFDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLI 496

  Fly   441 RQNQVRTRTMRELVHFYYLWKKSERRD----------QSFALNDTI-DHMDVFINEAGGGNGSGN 494
            :.|:||||::.|.|.|||:||||||.|          :.:.|:..: |:||..::|:.....|..
  Rat   497 QANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRA 561

  Fly   495 GNGAGIVSGTANS-----NGSCSPHSSNG-HSNGDLSALEKDTIASPRKPASKSYSIMTGSQAVG 553
            .:.....|.::.|     :|:.|..:.|| .|||....|.|:             .:......|.
  Rat   562 PSPPPTASNSSTSQSEKEDGTLSNSNQNGVSSNGPGEILNKE-------------EVKVEGLHVN 613

  Fly   554 NPSGGNRKRCSSASLPLEDEDNNVEEEPSLST 585
            .|:|||:|..      |.|.|.|..||.:|:|
  Rat   614 GPTGGNKKPL------LTDVDTNGYEENNLAT 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1620NP_001260777.1 ELM2 275..320 CDD:279754 20/45 (44%)
SANT 417..463 CDD:197842 24/45 (53%)
SANT_MTA3_like 417..462 CDD:212559 23/44 (52%)
Mier1XP_017448862.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341848
Domainoid 1 1.000 72 1.000 Domainoid score I9104
eggNOG 1 0.900 - - E1_KOG1194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 198 1.000 Inparanoid score I3723
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062529at2759
OrthoFinder 1 1.000 - - FOG0001261
OrthoInspector 1 1.000 - - otm44603
orthoMCL 1 0.900 - - OOG6_107398
Panther 1 1.100 - - LDO PTHR10865
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1119
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.800

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