DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1620 and saeg-1

DIOPT Version :9

Sequence 1:NP_001260777.1 Gene:CG1620 / 35678 FlyBaseID:FBgn0033183 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_505769.2 Gene:saeg-1 / 179505 WormBaseID:WBGene00010012 Length:900 Species:Caenorhabditis elegans


Alignment Length:644 Identity:130/644 - (20%)
Similarity:215/644 - (33%) Gaps:218/644 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DHSQHSASEASAD-----SGSLANSDLAVTPTKRERRKSPATSSDNNSTSVQPPMSPSSSVADTT 68
            ||..:.....|.|     ||....|:: ::|.|.|       ::|           ||..:|..:
 Worm   212 DHVDNPFGNPSHDMMDVTSGQPVKSEM-LSPIKME-------TTD-----------PSQQIASPS 257

  Fly    69 FEPTIDMMVNDFDDEATLNEEEALADMEAHSAEDEIATLREESEMPIEELLAKYGGTAAS----- 128
            |                |....:|.....|.........|:.|.|.::..|....||..:     
 Worm   258 F----------------LMTSTSLLKQHLHKKSHHNVPSRKASIMALKSQLRTPRGTPLNISTVP 306

  Fly   129 --------PAMSSSNRSGSS-----SRRARRATKRQYQELDTEMAHTSTSTSSSTSQLEKHDGID 180
                    |.:.:..|:||.     .:.|..:.....|..|        :.|.||      :|:|
 Worm   307 GTELPYTPPPILAPMRNGSGLFCQIVKSANSSLPVAEQSPD--------APSCST------NGVD 357

  Fly   181 QEEEPKEEADKLASPPESGEASS------------VDTEDAQKYEGIKKQHRSHLLDLYPDESFV 233
            .:.:......|.:   |.|:..|            ..|..|.:.|.::|:  |.......||.. 
 Worm   358 GDMKHLMNGKKRS---EDGDGPSRKNGFFYMAQQMNQTNFANELEALRKE--SWASTSSADEKM- 416

  Fly   234 DLAPTCGEETERFTPLQTLFDEVEAEEEEESESELDDARKI------IMVGHDYQAEIPEGLSQY 292
                    :|||...|:::   .:|....:|..|:::..||      |.:|.:|||.:.:     
 Worm   417 --------QTERKESLESI---RKASCMSDSYYEIEEGPKISDPNPHINLGKNYQARVKK----- 465

  Fly   293 GDILPYENEDQLIWEPSQV--SEREVEEYLAKIQETRSIVPPDDGSETTAGEEGAATGATIEPPA 355
                         |...||  |||:..|...:|..:..|:...|..:.||.|..|.:.|.     
 Worm   466 -------------WCDRQVSTSERDAIEDRDEIVFSSEILQDIDPEQITAFELLACSQAC----- 512

  Fly   356 PITAPATPPRAPLATSGAGDQELVVKDNEQALHLLVQCGYDFKEALRRKRMNVLPLTDTM----- 415
                    |||.             ::.|.|||||::...:.:.|:..     |..:||:     
 Worm   513 --------PRAG-------------RNKELALHLLMENKGNIEAAVED-----LLRSDTLDWEHY 551

  Fly   416 SS-----------WSEDECLKFEEGIQRFGKDFYQIRQNQVRTRTMRELVHFYYLWKKS------ 463
            ||           |:.||..:|::.|.:..|||.::.. ::..::::|.|.|||.|||.      
 Worm   552 SSVFGYMYNDSVLWTPDEIYQFQDAIYQSEKDFDKVAV-ELPGKSVKECVQFYYTWKKDCPDDYR 615

  Fly   464 -----ERRDQSFALN--------DTIDHMDVFINEAGGGNGSGNGNGAGIVSGTANSNGSCSPHS 515
                 .|:.|...:|        ..:....:.|.|:|..:...|...:..:              
 Worm   616 KLRNLRRKRQLLDINLQKNQSEEPVVPAKKISIIESGDSDNESNATDSSFI-------------- 666

  Fly   516 SNGHSNGDLSALEKDTIASPRK-------PASKSYSIMTGSQAVGNPSGGNRKRCSSAS 567
            .|||......|.....::|||:       |:||.   :.|.|....|:........|||
 Worm   667 GNGHMEFRDRAFTSPMMSSPREEPIIGLSPSSKD---LFGIQKNYQPTAPRAHHTPSAS 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1620NP_001260777.1 ELM2 275..320 CDD:279754 12/46 (26%)
SANT 417..463 CDD:197842 16/56 (29%)
SANT_MTA3_like 417..462 CDD:212559 15/55 (27%)
saeg-1NP_505769.2 SANT 565..608 CDD:304392 14/43 (33%)
SANT 565..608 CDD:197842 14/43 (33%)
zf-C2H2 736..758 CDD:278523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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