DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1620 and LOC100535969

DIOPT Version :9

Sequence 1:NP_001260777.1 Gene:CG1620 / 35678 FlyBaseID:FBgn0033183 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_009291072.1 Gene:LOC100535969 / 100535969 -ID:- Length:975 Species:Danio rerio


Alignment Length:543 Identity:108/543 - (19%)
Similarity:177/543 - (32%) Gaps:194/543 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GKSSDHSQHSASEASADSGSLANSDLAVTPTKRERRKSPATSSDNNSTSVQPPMSPSSSVADTTF 69
            ||||     :..:|...:|  ...|:....|:|..:.|.|:|.|....:..|             
Zfish   337 GKSS-----AVCKAPPQTG--VRGDVLKHFTQRASQWSKASSPDVKDEAASP------------- 381

  Fly    70 EPTIDMMVNDFDDEATLNEEE-ALADMEAHSAEDEIATLREESEMP-IEELLAKYGGTAASPAMS 132
                     .|..:|.|:.:| :.|.|:.      ...|||...:| :...:..:||....|| :
Zfish   382 ---------HFRADAGLSRDEGSYAKMKC------TVCLREFKSLPALNGHMRSHGGLRTHPA-N 430

  Fly   133 SSNRSGSSSRRAR-----------RATKRQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQE--EE 184
            ...|.|..:..|.           ....:.||          |.|..:....:|.||:.:.  :.
Zfish   431 LKMRDGQMNMCAEVPQGNPIILPVSVPVKNYQ----------TQTKLTLLCQQKDDGLIKSCAQT 485

  Fly   185 PKEEADKLASPPESGEASSVDTEDAQKYEGIKKQHRSHLLDL-YPDESFVDLAPTCGEETE---- 244
            |   ...|.:.|...:.|:.:.|.|.|.  :||::|..|:.| .|       :|:.|:|:.    
Zfish   486 P---LPPLRNHPSCIKRSNSEGESAPKQ--VKKKYRHCLVPLMIP-------SPSDGQESRGAVL 538

  Fly   245 ---------------RFTPL---------QTLFDEVEAEEEEES--------ESELDDARKI--- 274
                           .:||.         ..||..|......:|        ..|:||..:.   
Zfish   539 FRSQLRTASSMSDDAPYTPPPMLSPARPGSGLFSAVSGRANIQSTPERLLSRAGEMDDCGETLKE 603

  Fly   275 --------IMVGHDYQAEIPEGLSQYGDILPYENEDQ--LIWEPSQVSEREVEEYLAKIQE---- 325
                    |.:|.::||:||   :..|..|..|:...  |:|  ||..:.|..:...|:..    
Zfish   604 TAINVTPRINIGEEFQAKIP---NIKGQSLTEEDSHNAVLLW--SQTKDMESPDNQHKVDNLLKM 663

  Fly   326 TRSIVPPDDGSETTAGEEGAATGATIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHLL 390
            ..|.|.|..|:.|                                             |..||.|
Zfish   664 ACSSVLPGGGANT---------------------------------------------EYVLHCL 683

  Fly   391 VQCGYDFKEALRRKRMNVLPL----TDTMSS---------WSEDECLKFEEGIQRFGKDFYQIRQ 442
            .:|..|....:.:.   :||.    |..:.:         |:..|..:..:.:....||||.: |
Zfish   684 FECRGDIMNTVEKL---LLPTLIRHTSNLKTDYHYAGSDRWTLQEKRQLNKALLLHHKDFYLV-Q 744

  Fly   443 NQVRTRTMRELVHFYYLWKKSER 465
            ..|:|:::.:.|.:||.|||..|
Zfish   745 KMVKTKSVAQCVEYYYTWKKRLR 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1620NP_001260777.1 ELM2 275..320 CDD:279754 14/46 (30%)
SANT 417..463 CDD:197842 14/54 (26%)
SANT_MTA3_like 417..462 CDD:212559 13/53 (25%)
LOC100535969XP_009291072.1 zf-C2H2_6 400..421 CDD:290623 4/26 (15%)
ELM2 612..666 CDD:279754 15/58 (26%)
SANT 719..765 CDD:197842 14/46 (30%)
SANT 721..764 CDD:304392 13/43 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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