DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment p47 and SHP1

DIOPT Version :9

Sequence 1:NP_610284.1 Gene:p47 / 35674 FlyBaseID:FBgn0033179 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_009495.1 Gene:SHP1 / 852222 SGDID:S000000154 Length:423 Species:Saccharomyces cerevisiae


Alignment Length:444 Identity:116/444 - (26%)
Similarity:188/444 - (42%) Gaps:73/444 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 DLIAQFIEITGTDENVARFYLSSCDWDIEHALGNYWSTQADLPVPVPTVGHADNPK--------- 61
            :.|.||:.:|....|:|..|||... |:..||.:|:::|.|.........|.:..:         
Yeast     7 ETIQQFMALTNVSHNIAVQYLSEFG-DLNEALNSYYASQTDDQKDRREEAHWNRQQEKALKQEAF 70

  Fly    62 ------------------PKPTSSSGASASASAAGATKSADSAVATSSASVDIAPAATKAKPKFA 108
                              |||.||.|::......|:|....:..::.|.|.:        ..:|.
Yeast    71 STNSSNKAINTEHVGGLCPKPGSSQGSNEYLKRKGSTSPEPTKGSSRSGSGN--------NSRFM 127

  Fly   109 TLSDMSKESSSDDDQ---QAFYAGGSDRSGQQVLGPPKRKNFREQLTDMMRSAQEQNIAEVGPST 170
            :.|||.:..:.|||:   :..:||| :.||.:|..|....:..:.|.:..|...:.. ||.|...
Yeast   128 SFSDMVRGQADDDDEDQPRNTFAGG-ETSGLEVTDPSDPNSLLKDLLEKARRGGQMG-AENGFRD 190

  Fly   171 SSGSASGGSGGAVWGQGMRLGMTDN-------DHTAVGTKKPAATIENKPVVVLKLWSQGFSIDG 228
            ......|.:  ...|:|.|||.|.:       |:|:...::|     .|....:..|.:||.:..
Yeast   191 DEDHEMGAN--RFTGRGFRLGSTIDAADEVVEDNTSQSQRRP-----EKVTREITFWKEGFQVAD 248

  Fly   229 GELRHYDDPQNKEFLETVMRGEIPQELLEM--GRMVNVDVEDHRHEDFKRQPVPQT--FKGSGQK 289
            |.|..||||.|..:|..:.:|..|.:||::  |:.|.|:|.....|.:| .|..:.  |.|.||:
Yeast   249 GPLYRYDDPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYK-APTRKLGGFSGQGQR 312

  Fly   290 LGSPVANLVTEAPTVPVALSPGEAANQEASARDAINLNSEAP---STTLQIRLADGSRLAAQFNL 351
            ||||          :|...||.|....|..|.....:....|   .|::|||.|:|.|.....|.
Yeast   313 LGSP----------IPGESSPAEVPKNETPAAQEQPMPDNEPKQGDTSIQIRYANGKREVLHCNS 367

  Fly   352 SHTVSDIRRFIQTARPQYSTSNFILVSSFPTRELSDDNSTIEKAGLKNAALMQR 405
            :.||..:...:.:......:.||.|..:||.:.:|:|.:|::.|.|.|:.::||
Yeast   368 TDTVKFLYEHVTSNANTDPSRNFTLNYAFPIKPISNDETTLKDADLLNSVVVQR 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p47NP_610284.1 UBA_ceTYDP2_like 6..42 CDD:270612 13/35 (37%)
SEP 211..300 CDD:197786 31/92 (34%)
p47_UBX 329..407 CDD:176365 24/80 (30%)
SHP1NP_009495.1 UBA_Ubx1_like 6..41 CDD:270536 12/34 (35%)
SEP 231..323 CDD:197786 32/102 (31%)
UBX_UBXN2 350..421 CDD:340468 20/70 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157342005
Domainoid 1 1.000 44 1.000 Domainoid score I3141
eggNOG 1 0.900 - - E1_KOG2086
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41114
Inparanoid 1 1.050 123 1.000 Inparanoid score I1291
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54012
OrthoFinder 1 1.000 - - FOG0001623
OrthoInspector 1 1.000 - - otm46484
orthoMCL 1 0.900 - - OOG6_102041
Panther 1 1.100 - - LDO PTHR23333
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1594
SonicParanoid 1 1.000 - - X629
TreeFam 1 0.960 - -
1514.790

Return to query results.
Submit another query.