Protein Alignment so and AT4G12750

DIOPT Version :10

• Sequence 1: NP_476733.1
• Gene: so / 35662
• FlyBaseID: FBgn0003460
• Length: 416
• Species: Drosophila melanogaster
• Sequence 2: NP_001319916.1
• Gene: AT4G12750 / 826887
• AraportID: AT4G12750
• Length: 1117
• Species: Arabidopsis thaliana
• Alignment Length: 209
• Identity: 48/209 - (22%)
• Similarity: 72/209 - (34%)
• Gaps: 67/209 - (32%)

  Fly   205 VRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYPSPREKRDLAEATGLTTTQVSNWFKNR 269
            ::||.||                 ....|..:|....||:|:|..||.::.|||..:|..|||.|
plant     1 MKRKSPL-----------------QVQALEGFYLEQMYPTPKEMEDLGKSLGLTLKEVRGWFKRR 48

  Fly   270 RQRDRAAEH--KDG-------STDKQHLDSSSDSEMEG-----------------SMLPSQSAQH 308
            |.|.:..:.  .||       ..|:..:.||:.|...|                 ::|||.....
plant    49 RSRGKGVKSMANDGLGAKNPQLYDRSLMRSSTSSRCVGVAVEERCIVGTRKASCQNLLPSSHILA 113

  Fly   309 QQQQQ-------QQQHSP---------GNSSGNNNGLHQQQLQHVAAEQGLQHHPHQPHPASNIA 357
            :..::       :..|.|         |.||..      ||.|.||.::.:..  ...|.:.:..
plant   114 KVFRKDGPSLGSEFDHLPSGARKASWLGTSSVG------QQKQKVARKRKISE--LMDHTSQDCI 170

  Fly   358 NVAATKSSGGGGGG 371
            ...||....|.|.|
plant   171 QENATVMKHGIGKG 184

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
so	NP_476733.1	SIX1_SD	103..212	CDD:465293	3/6 (50%)
		homeodomain	223..274	CDD:238039	18/50 (36%)
AT4G12750	NP_001319916.1	homeodomain	3..51	CDD:238039	21/64 (33%)
		DDT	352..397	CDD:460696
		HARE-HTH	492..559	CDD:480770
		WHIM1	629..672	CDD:464774
		WSD	753..828	CDD:464775