Protein Alignment so and Six3

DIOPT Version :10

• Sequence 1: NP_476733.1
• Gene: so / 35662
• FlyBaseID: FBgn0003460
• Length: 416
• Species: Drosophila melanogaster
• Sequence 2: XP_063118601.1
• Gene: Six3 / 78974
• RGDID: 620909
• Length: 356
• Species: Rattus norvegicus
• Alignment Length: 232
• Identity: 138/232 - (59%)
• Similarity: 173/232 - (74%)
• Gaps: 15/232 - (6%)

  Fly    62 AHNGGGAGGGLHLNSSSNGGGGGGVVSGGGSGGRE---------NLPSFGFTQEQVACVCEVLQQ 117
            |..|||.|||........||.|||  .|||.||..         .||:..|:.||||.|||.|::
  Rat    44 AGGGGGGGGGNRAGGGGAGGAGGG--GGGGGGGSRAPPEELSMFQLPTLNFSPEQVASVCETLEE 106

  Fly   118 AGNIERLGRFLWSLP----QCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQNHAKLQ 178
            .|:||||||||||||    .|:.:..:||:|:|:||||||.|.:::||.:||:|.|:.::|.|||
  Rat   107 TGDIERLGRFLWSLPVAPGACEAINKHESILRARAVVAFHTGNFRDLYHILENHKFTKESHGKLQ 171

  Fly   179 ALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYP 243
            |:||:|||.|||||||||||.|.|||||:||||||||||||:.::||||::||:||:||..:|||
  Rat   172 AMWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYP 236

  Fly   244 SPREKRDLAEATGLTTTQVSNWFKNRRQRDRAAEHKD 280
            :|.:||:||:|||||.|||.|||||||||||||..|:
  Rat   237 NPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 273

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
so	NP_476733.1	SIX1_SD	103..212	CDD:465293	70/112 (63%)
		homeodomain	223..274	CDD:238039	35/50 (70%)
Six3	XP_063118601.1	None