DRSC/TRiP Functional Genomics Resources

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Protein Alignment so and six2b

DIOPT Version :9

Sequence 1:NP_476733.1 Gene:so / 35662 FlyBaseID:FBgn0003460 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001122206.1 Gene:six2b / 566454 ZFINID:ZDB-GENE-080723-23 Length:285 Species:Danio rerio


Alignment Length:328 Identity:182/328 - (55%)
Similarity:212/328 - (64%) Gaps:63/328 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 PSFGFTQEQVACVCEVLQQAGNIERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRL 163
            |:|||||||||||||||||.|:||||||||||||.|:.|..||||||||||||||||.::|||::
Zfish     5 PTFGFTQEQVACVCEVLQQGGSIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKV 69

  Fly   164 LEHHHFSAQNHAKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEK 228
            ||.|.||..||.|||.|||||||:||||||||||||||||||||||||||:||||||||||||||
Zfish    70 LESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEK 134

  Fly   229 SRSVLRDWYSHNPYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRAAEHKDGSTDKQHLDSSSD 293
            ||.||::||:|||||||||||:|||||||||||||||||||||||||||.|             :
Zfish   135 SRCVLKEWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAK-------------E 186

  Fly   294 SEMEGSMLPSQSAQHQQQQQQQQHSPGNSSGNNNGLHQQQLQHVAAEQGLQHHPHQPHPASNIAN 358
            .|.||:             ....|:|..|..|.|....:......:..|...|       :|::.
Zfish   187 RENEGA-------------NPNGHNPLTSHVNENKSLCESSDDDKSPAGTPDH-------TNMSP 231

  Fly   359 VAATKSSGGGGGGGVSAAAAAQMQMPPL---------TAAVA--YSHLHSVM--GAM-PMTA-MY 408
            .....||.|               :|||         :|:::  .||.|..|  |.: |||| :.
Zfish   232 AILMPSSSG---------------LPPLHSFAPPPGPSASISDTQSHHHFSMHDGLLNPMTASLV 281

  Fly   409 DMG 411
            ::|
Zfish   282 ELG 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
soNP_476733.1 SIX1_SD 103..212 CDD:293483 89/108 (82%)
homeodomain 223..274 CDD:238039 45/50 (90%)
six2bNP_001122206.1 SIX1_SD 9..118 CDD:293483 89/108 (82%)
homeodomain 129..180 CDD:238039 45/50 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3007
eggNOG 1 0.900 - - E1_KOG0775
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 354 1.000 Inparanoid score I2212
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001063
OrthoInspector 1 1.000 - - otm25804
orthoMCL 1 0.900 - - OOG6_106461
Panther 1 1.100 - - O PTHR10390
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X333
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.820

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