Protein Alignment so and six3b

DIOPT Version :10

• Sequence 1: NP_476733.1
• Gene: so / 35662
• FlyBaseID: FBgn0003460
• Length: 416
• Species: Drosophila melanogaster
• Sequence 2: NP_571438.1
• Gene: six3b / 30636
• ZFINID: ZDB-GENE-990415-128
• Length: 293
• Species: Danio rerio
• Alignment Length: 279
• Identity: 136/279 - (48%)
• Similarity: 176/279 - (63%)
• Gaps: 50/279 - (17%)

  Fly    98 LPSFGFTQEQVACVCEVLQQAGNIERLGRFLWSLP----QCDKLQLNESVLKAKAVVAFHRGQYK 158
            ||:..|:.||||.|||.|::.|:||||||||||||    .||.:..:||:.:|:||||:|.|.::
Zfish    44 LPTLNFSAEQVASVCETLEETGDIERLGRFLWSLPVAPGACDAINKHESIQRARAVVAYHTGSFR 108

  Fly   159 ELYRLLEHHHFSAQNHAKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSY 223
            |||.:||.|.|:..:|.||||:||:|||.|||||||||||.|.|||||:||||||||||||:.::
Zfish   109 ELYHILETHKFTKDSHGKLQAMWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTH 173

  Fly   224 CFKEKSRSVLRDWYSHNPYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRAAEHKDGSTDKQHL 288
            ||||::|.:||:||..:|||:|.:||:||:|||||.|||.|||||||||||||..|:
Zfish   174 CFKERTRGLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN-------- 230

  Fly   289 DSSSDSEMEGSMLPSQSAQHQQQQQQQQHSPGNSSGNNNGLHQQQLQHVAAEQGLQHHPHQPHP- 352
                                     :.||         :||.|..|:.: :|.|...|.....|
Zfish   231 -------------------------RLQH---------HGLGQSSLRSM-SESGCTPHSSAESPC 260

  Fly   353 --ASNIANVAATKSSGGGG 369
              ||...:|::....|.||
Zfish   261 AAASPTTSVSSMNERGDGG 279

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
so	NP_476733.1	SIX1_SD	103..212	CDD:465293	70/112 (63%)
		homeodomain	223..274	CDD:238039	34/50 (68%)
six3b	NP_571438.1	SIX1_SD	49..162	CDD:465293	70/112 (63%)
		homeodomain	170..218	CDD:238039	28/47 (60%)