Protein Alignment so and Six4

DIOPT Version :9

• Sequence 1: NP_476733.1
• Gene: so / 35662
• FlyBaseID: FBgn0003460
• Length: 416
• Species: Drosophila melanogaster
• Sequence 2: XP_006240269.1
• Gene: Six4 / 299138
• RGDID: 1306726
• Length: 775
• Species: Rattus norvegicus
• Alignment Length: 366
• Identity: 159/366 - (43%)
• Similarity: 198/366 - (54%)
• Gaps: 58/366 - (15%)

  Fly    30 SPTGLSGSVALHNNNNNNSSTSNNNNSTLDIMAHNGGGAGGGL-------------HLNSSSNGG 81
            ||||...|.|.....|...|.|....:..::    .|||..||             ...::|...
  Rat     5 SPTGQIASAADIKQENGMESASEGQEAHREV----AGGAAAGLSPPAPAPFPLEPGDAAAASRVS 65

  Fly    82 GGGGVVSGGGSG---------GREN-----LPSFGFTQEQVACVCEVLQQAGNIERLGRFLWSLP 132
            ...|..:.|.:.         ||..     .|...|:.:.||||||.|||.||::||.|||||||
  Rat    66 REEGAAAAGAADQVQLHSELLGRHQHAATAQPPLAFSPDHVACVCEALQQGGNLDRLARFLWSLP 130

  Fly   133 QCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQNHAKLQALWLKAHYVEAEKLRGRPL 197
            |.|.|:.|||:|||:|:||||:|.|.|||.:||.|.|.:.||..||.||.||.|.|||:.|||||
  Rat   131 QSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPL 195

  Fly   198 GAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYPSPREKRDLAEATGLTTTQV 262
            |||.|||:||||||||||||||||.||||||||:.|::.|..|.||||.|||.||:.|||:.|||
  Rat   196 GAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQV 260

  Fly   263 SNWFKNRRQRDRAAEHKDGSTDKQHLDSSSDSEMEGSMLPSQSAQHQQQQQQQQHSPGNSSGNNN 327
            ||||||||||||...           ::.|.||.:|    :.|.:.:..:..:..||...||.::
  Rat   261 SNWFKNRRQRDRNPS-----------ETQSKSESDG----NPSTEDESSKGHEDLSPHPLSGASD 310

  Fly   328 GLHQQQL-QHVAAEQGLQHHPHQPHPASNIANVAATKSSGG 367
            |:....| .|:           :|.....|.|...:.||.|
  Rat   311 GVTNLSLSSHM-----------EPVYMQQIGNAKISLSSSG 340

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
so	NP_476733.1	SIX1_SD	103..212	CDD:293483	72/108 (67%)
		homeodomain	223..274	CDD:238039	36/50 (72%)
Six4	XP_006240269.1	SIX1_SD	101..210	CDD:293483	72/108 (67%)
		homeodomain	221..275	CDD:238039	38/53 (72%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0775
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810