DRSC/TRiP Functional Genomics Resources

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Protein Alignment so and Six5

DIOPT Version :10

Sequence 1:NP_476733.1 Gene:so / 35662 FlyBaseID:FBgn0003460 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_035513.1 Gene:Six5 / 20475 MGIID:106220 Length:719 Species:Mus musculus


Alignment Length:419 Identity:159/419 - (37%)
Similarity:201/419 - (47%) Gaps:86/419 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 TLDIMAHNGGGAGGGLHLNSSSNGGGGGGVVSGGGSGGRENL----PSFGFTQEQVACVCEVLQQ 117
            ||.........||.|     .:......|..||.|| .||.:    ....|:.||||||||.|.|
Mouse    35 TLQAAEGEAAAAGAG-----DAAAAADSGSPSGPGS-PRETVTEVPTGLRFSPEQVACVCEALLQ 93

  Fly   118 AGNIERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQNHAKLQALWL 182
            ||:..||.|||.:||..::|:.::.||:|:|:|||.||:|.|||:|||...|.|.:||.||.|:|
Mouse    94 AGHAGRLSRFLGALPPAERLRGSDPVLRARALVAFQRGEYAELYQLLESRPFPAAHHAFLQDLYL 158

  Fly   183 KAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYPSPRE 247
            :|.|.|||:.|||.||||.|||:|:|||||:||||||||.|||||:||:.|:..|..|.||:|.|
Mouse   159 RARYHEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPDE 223

  Fly   248 KRDLAEATGLTTTQVSNWFKNRRQRDRAA--------EHKDGSTDKQHLDSSSDSEME---GSM- 300
            ||.||..|||:.|||||||||||||||..        ...||:...:...|.|..::|   .|| 
Mouse   224 KRRLATLTGLSLTQVSNWFKNRRQRDRTGTGGGAPCKSESDGNPTTEDESSRSPEDLERGVASMA 288

  Fly   301 --LPSQSAQHQQQQQQQQHSPGNSS------------------------------GNNNGL---- 329
              .|:||:............|.:||                              |.|:.|    
Mouse   289 AEAPAQSSIFLAGATSPATCPASSSILVNGSFLAASSPPAVLLNGSPVIINSLALGENSSLGPLL 353

  Fly   330 --------HQQQLQHVA-AEQGLQHHPHQPHPASNIANVAATKSSGGGGGGGVSAAAAAQMQMP- 384
                    .|..||.|: |:..|...|.......:.|...|.::.|..|..|.....|....:| 
Mouse   354 LTGGSAPQPQPSLQGVSEAKNSLVLDPQTGEVRLDEAQSEAPETKGVHGTTGEEIPGALPQVVPG 418

  Fly   385 -------PLTAAVAYSHLHSVMGAMPMTA 406
                   |||.           ||:|..|
Mouse   419 PPPASTFPLTP-----------GAVPAVA 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
soNP_476733.1 SIX1_SD 103..212 CDD:465293 64/108 (59%)
homeodomain 223..274 CDD:238039 34/50 (68%)
Six5NP_035513.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73 12/43 (28%)
SIX1_SD 79..188 CDD:465293 64/108 (59%)
homeodomain 199..250 CDD:238039 34/50 (68%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 241..287 15/45 (33%)
PHA03247 <380..651 CDD:223021 15/68 (22%)

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