DRSC/TRiP Functional Genomics Resources

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Protein Alignment so and Six4

DIOPT Version :10

Sequence 1:NP_476733.1 Gene:so / 35662 FlyBaseID:FBgn0003460 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_035512.1 Gene:Six4 / 20474 MGIID:106034 Length:775 Species:Mus musculus


Alignment Length:366 Identity:160/366 - (43%)
Similarity:198/366 - (54%) Gaps:58/366 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 SPTGLSGSVALHNNNNNNSSTSNNNNSTLDIMAHNGGGAGGGL-------------HLNSSSNGG 81
            ||||...|.|.....|...|.|....:..::    .|||..||             ...::|...
Mouse     5 SPTGQIASAADIKQENGMESASEGQEAHREV----AGGAAAGLSPPAPAPFPLEPGDAAAASRVS 65

  Fly    82 GGGGVVSGGGSG---------GREN-----LPSFGFTQEQVACVCEVLQQAGNIERLGRFLWSLP 132
            ...|..:.|.:.         ||..     .|...|:.:.||||||.|||.||::||.|||||||
Mouse    66 REEGAAAAGAADQVQLHSELLGRHQHAAAAQPPLAFSPDHVACVCEALQQGGNLDRLARFLWSLP 130

  Fly   133 QCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQNHAKLQALWLKAHYVEAEKLRGRPL 197
            |.|.|:.|||:|||:|:||||:|.|.|||.:||.|.|.:.||..||.||.||.|.|||:.|||||
Mouse   131 QSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPL 195

  Fly   198 GAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYPSPREKRDLAEATGLTTTQV 262
            |||.|||:||||||||||||||||.||||||||:.|::.|..|.||||.|||.||:.|||:.|||
Mouse   196 GAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQV 260

  Fly   263 SNWFKNRRQRDRAAEHKDGSTDKQHLDSSSDSEMEGSMLPSQSAQHQQQQQQQQHSPGNSSGNNN 327
            ||||||||||||...           ::.|.||.:|    :.|.:.:..:..:..||...||.::
Mouse   261 SNWFKNRRQRDRNPS-----------ETQSKSESDG----NPSTEDESSKGHEDLSPHPLSGASD 310

  Fly   328 GLHQQQL-QHVAAEQGLQHHPHQPHPASNIANVAATKSSGG 367
            |:....| .||           :|.....|.|...:.||.|
Mouse   311 GVTNLSLSSHV-----------EPVYMQQIGNAKISLSSSG 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
soNP_476733.1 SIX1_SD 103..212 CDD:465293 72/108 (67%)
homeodomain 223..274 CDD:238039 36/50 (72%)
Six4NP_035512.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..76 17/74 (23%)
SIX1_SD 101..210 CDD:465293 72/108 (67%)
homeodomain 221..275 CDD:238039 38/53 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..313 20/64 (31%)
Transactivation domain 582..775
Blue background indicates that the domain is not in the aligned region.

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