DRSC/TRiP Functional Genomics Resources

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Protein Alignment so and SIX5

DIOPT Version :9

Sequence 1:NP_476733.1 Gene:so / 35662 FlyBaseID:FBgn0003460 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_787071.3 Gene:SIX5 / 147912 HGNCID:10891 Length:739 Species:Homo sapiens


Alignment Length:387 Identity:153/387 - (39%)
Similarity:195/387 - (50%) Gaps:75/387 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 GGGAGGGLHLNSSSNGGGGGGVVSGGGSGGRENLPSFGFTQEQVACVCEVLQQAGNIERLGRFLW 129
            |.|||...   :.:.|.|..||.........|......|:.||||||||.|.|||:..||.|||.
Human    51 GAGAGAAA---AGAEGPGSPGVPGSPPEAASEPPTGLRFSPEQVACVCEALLQAGHAGRLSRFLG 112

  Fly   130 SLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQNHAKLQALWLKAHYVEAEKLRG 194
            :||..::|:.::.||:|:|:|||.||:|.|||||||...|.|.:||.||.|:|:|.|.|||:.||
Human   113 ALPPAERLRGSDPVLRARALVAFQRGEYAELYRLLESRPFPAAHHAFLQDLYLRARYHEAERARG 177

  Fly   195 RPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYPSPREKRDLAEATGLTT 259
            |.||||.|||:|:|||||:||||||||.|||||:||:.|:..|..|.||:|.|||.||..|||:.
Human   178 RALGAVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLSL 242

  Fly   260 TQVSNWFKNRRQRDRAAEHKDGSTDKQHLDSSSDSEMEGSMLPSQSAQHQQQQQQQQHSPGNSSG 324
            |||||||||||||||... ..|:..|...|.:..:|.|.|..|        :..::..:|     
Human   243 TQVSNWFKNRRQRDRTGA-GGGAPCKSESDGNPTTEDESSRSP--------EDLERGAAP----- 293

  Fly   325 NNNGLHQQQLQHVAAEQGLQHH-------PHQPHPASN--IANVAATKSSG-------GG----- 368
                        |:||...|..       |..|.|||:  :.|.:...:||       ||     
Human   294 ------------VSAEAAAQGSIFLAGTGPPAPCPASSSILVNGSFLAASGSPAVLLNGGPVIIN 346

  Fly   369 ----------------GGGGVSAAAAAQMQMPPLTAAVAYSHLHSVMGAMPMTAMYDMGEYQ 414
                            ||||..         ||..:....|...:.:...|.|....:.|.|
Human   347 GLALGEASSLGPLLLTGGGGAP---------PPQPSPQGASETKTSLVLDPQTGEVRLEEAQ 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
soNP_476733.1 SIX1_SD 103..212 CDD:293483 65/108 (60%)
homeodomain 223..274 CDD:238039 34/50 (68%)
SIX5NP_787071.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..84 9/35 (26%)
SIX1_SD 86..195 CDD:318970 65/108 (60%)
homeodomain 206..257 CDD:238039 34/50 (68%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 251..294 15/68 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 361..381 7/28 (25%)
Atrophin-1 <424..663 CDD:331285
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 617..650
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0775
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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