Protein Alignment so and six4

DIOPT Version :10

• Sequence 1: NP_476733.1
• Gene: so / 35662
• FlyBaseID: FBgn0003460
• Length: 416
• Species: Drosophila melanogaster
• Sequence 2: XP_002933781.2
• Gene: six4 / 100498150
• XenbaseID: XB-GENE-481699
• Length: 817
• Species: Xenopus tropicalis
• Alignment Length: 352
• Identity: 150/352 - (42%)
• Similarity: 198/352 - (56%)
• Gaps: 62/352 - (17%)

  Fly     4 HPATDFYDLAAANAAAVLTARHTPPYSPTGLSGSV--------ALHNNNNNNSSTSNNNNSTLDI 60
            :|.:.:||..||..               .|.||:        ........:|.|||...:.::|
 Frog    46 NPPSIYYDFCAAAG---------------NLIGSIEKGRTLFLKKRGEQKMSSPTSNGIGNAIEI 95

  Fly    61 MAHN---GGGAGGGLHLNS--------------SSNGGGGGGVVSGGGSGGRENLP-SFGFTQEQ 107
            ...|   .|.:.....|::              .:..|....::.|||:      | :..|:.|.
 Frog    96 KQENALESGESEVAAELSALEPAPFSMEHAGQVETESGIKNELLPGGGA------PYTLAFSPEH 154

  Fly   108 VACVCEVLQQAGNIERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQ 172
            ||||||.|||.|:::||.|||.|||..:.|:.|||:|||:|:|.||:|:|.||:.|||.|:|...
 Frog   155 VACVCEALQQGGDLDRLSRFLCSLPHSELLRGNESILKARALVTFHQGRYSELFLLLESHNFHPS 219

  Fly   173 NHAKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWY 237
            |||.||.||.||.|:||||.||||||||.|||:||||||||||||||||.||||||||:.|::.|
 Frog   220 NHAALQELWYKARYIEAEKARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELY 284

  Fly   238 SHNPYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRAAEHKDGSTDKQHLDSSSDSEMEGSMLP 302
            .||.||||..||:||:.|||:.|||||||||||||||...           ::.|.||.:|
 Frog   285 KHNRYPSPAAKRNLAKVTGLSLTQVSNWFKNRRQRDRNPS-----------EAQSKSESDG---- 334

  Fly   303 SQSAQHQQQQQQQQHSPGNSSGNNNGL 329
            :.|.:.:..:.|...||...|.:::|:
 Frog   335 NHSTEDESSKGQDDLSPHPLSNSSDGV 361

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
so	NP_476733.1	SIX1_SD	103..212	CDD:465293	70/108 (65%)
		homeodomain	223..274	CDD:238039	36/50 (72%)
six4	XP_002933781.2	SIX1_SD	150..259	CDD:465293	70/108 (65%)
		homeodomain	270..324	CDD:238039	38/53 (72%)