DRSC/TRiP Functional Genomics Resources

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Protein Alignment agr-1 and trol

DIOPT Version :9

Sequence 1:NP_001022152.3 Gene:agr-1 / 3565243 WormBaseID:WBGene00018304 Length:1473 Species:Caenorhabditis elegans
Sequence 2:NP_001027038.3 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4479 Species:Drosophila melanogaster


Alignment Length:1376 Identity:273/1376 - (19%)
Similarity:398/1376 - (28%) Gaps:502/1376 - (36%)


- Green bases have known domain annotations that are detailed below.


 Worm   151 AICEQS----LCPFGSKCGLKTGVCECKARCRVVTDVVCGSDHVSYSSFCHLSVRSCVLAKNGVR 211
            |:|:.|    .|..|..|..|:.||:.|.:|...:|          .|.|||..|     .|..|
  Fly   848 ALCKCSGDKYKCQRGGGCIPKSQVCDGKPQCHDRSD----------ESACHLHGR-----LNKTR 897

 Worm   212 LRV--------ATKGPC----KKRNPCEDLRCGPGED---CVV------------NQIN--GILL 247
            |.|        ...|.|    |:.|...|  |....|   |:.            |.:|  .||.
  Fly   898 LGVKCLESQYQCGDGSCISGYKRCNGIHD--CADASDEYNCIYDYEDTYDTDPNNNPLNECDILE 960

 Worm   248 AKC---VC---PTQCPNYGDSVESSP--VCSSHGVDYQSSCHLRHHACESKTNITVKFFGRCDP- 303
            .:|   .|   ..:|..|.|..:.|.  .|.|    |...|......|:|          .|.| 
  Fly   961 FECDYSQCLPLEKKCDGYADCEDMSDELECQS----YTDHCLESEFECDS----------YCLPR 1011

 Worm   304 ---CHGHKCPNGQTCQLGVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILV 365
               |:|  .||   ||.|.|.|....|.|     .|::|.|......|:....:|.|.:..|   
  Fly  1012 DQLCNG--IPN---CQDGSDERNCTFCRE-----DAYLCNTGECVADNQRCNGIADCADGSD--- 1063

 Worm   366 WKRGNCDEAGSPCEKMECGFWGSCV---VKPDRTAEC--------------ECPNRCEDVMRPVC 413
              ..:|.....|..|:.|.  |:||   :|.|...:|              ..|.:..:|:||..
  Fly  1064 --ERHCARIYCPPNKLACN--GTCVSRRIKCDGIRDCLDGYDEMYCPETNNHYPTQNVNVIRPKL 1124

 Worm   414 ATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGVCATFDSCKKPQVCVVVDGKPKC----VCP 474
            ..|         ...|||.       .|:..|....|              :|...:|    .|.
  Fly  1125 GPN---------PIPKSCR-------PHEWQCANLEC--------------IDSSLQCNEIKDCS 1159

 Worm   475 SCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC-EACKLKKEKCDFYSACVVGENE 538
            ..:||...||.....|     ||:.:.|..::       ..| |:|..:..:|:.:..|..|.:|
  Fly  1160 DGSDEELSVCFGTATT-----RLKPSDCSPEQ-------FYCDESCYNRSVRCNGHVDCSDGSDE 1212

 Worm   539 KAECKCPDDCPSYEMEEGK-----EVCG-----TDGVTYSSECHMKKSACHQSKFVMTAFE---- 589
             ..|..|  ||.::...|:     |.|.     .||...::.|:..:..|:....|..:..    
  Fly  1213 -VGCSLP--CPQHQCPSGRCYTESERCDRHRHCEDGSDEANCCYANQFRCNNGDCVSGSAPCNGY 1274

 Worm   590 ------------GKCDECLHVQCRYGEECRSGVCVCS----------------YNC--------- 617
                        |...|||..|.|    |.||.||.|                .||         
  Fly  1275 SECSDHSDELNCGGTQECLPNQFR----CNSGQCVSSSVRCNGRTDCQDSSDEQNCAADSNDRRP 1335

 Worm   618 --------------------------------------PANPPLSARICGENGVL-YPSL----- 638
                                                  |...||.......||.| .|::     
  Fly  1336 NQLNLKTYPDSQIIKESREVIFRCRDEGPARAKVKWSRPGGRPLPPGFTDRNGRLEIPNIRVEDA 1400

 Worm   639 ----CH-LQLASCQKGAPIS------------EMPPSHCHSSKTSFPDSCQCNRVGSFGHTCDET 686
                |. :..||...|..::            ..|.|.|    |.:..:|...........||..
  Fly  1401 GTYVCEAVGYASYIPGQQVTVNLNVERYNDVGSRPESAC----TEYQATCMNGECIDKSSICDGN 1461

 Worm   687 GQC-------------KCRPGVAGIKCDHCLPSFWGIHLIAQGALSC---RPCGCSAFGSSRSDC 735
            ..|             ||:|.........|:...|          .|   ..||.::..:| .|.
  Fly  1462 PDCSDASDEQSCSLGLKCQPNQFMCSNSKCVDRTW----------RCDGENDCGDNSDETS-CDP 1515

 Worm   736 EQTTGKC-----ECKNGALGDKCDLCPNGSMMTAG----GCVSPAVYKTPRDCHSLRCFHGAK-- 789
            |.:...|     :|::|....|...|.|....|.|    ||::|...:.|....||..:...:  
  Fly  1516 EPSGAPCRYNEFQCRSGHCIPKSFQCDNVPDCTDGTDEVGCMAPLPIRPPPQSVSLLEYEVLELT 1580

 Worm   790 CVPSPSSFPDCI-------CPQSCNMNHLGIVANMTVC----GSDGTTYSNLCELKMFACKHQID 843
            ||.:.:..|..:       .|..|.....|....:. |    ..|...||  ||:......|.::
  Fly  1581 CVATGTPTPTIVWRLNWGHVPDKCESKSYGGTGTLR-CPDMRPQDSGAYS--CEIINTRGTHFVN 1642

 Worm   844 ------VVPVSMGICDDENFEVLDRLQREKNSNEKRLGSPCTRHEECEKLSAQCITRPGRKSVCD 902
                  |.||...:|:...|.:|.|                 :.|||    .||           
  Fly  1643 PDTIVTVRPVRTDVCEAGFFNMLAR-----------------KAEEC----VQC----------- 1675

 Worm   903 CDDGWKSHLGICIEISKKRKSDQLELTTDINSDWYFSRKDINRFSKLSMHIHLKEKREGILIRMV 967
                      .|..::|  ..|...|.|                  .::|..:      :..|:|
  Fly  1676 ----------FCFGVAK--ACDSANLFT------------------YAIHPPI------LSHRVV 1704

 Worm   968 TEDKKDLQISHENRRIVIKVGKARVDSLQTIAYNVSLELKWKRNEVHFKLNGEVQKYTFEDVLDS 1032
            :.:...|      |:|||.......| |.|:.:.|    :::...|||                |
  Fly  1705 SVELSPL------RQIVINEAAPGQD-LLTLLHGV----QFRATNVHF----------------S 1742

 Worm  1033 SVKRIYVGTDGKWPRNRLNSIVGYLEID------DEPVRIDEIKPFYMAPEISRTLKFKENGFVQ 1091
            ..:..|:.....:..|:|.|..|.|..:      ..||.         .|::..|    .|.|..
  Fly  1743 GRETPYLALPADYMGNQLKSYGGNLRYEVNYRGSGRPVN---------GPDVIIT----GNRFTL 1794

 Worm  1092 FENLQIDVRERTRVEIVFKPYRTNGILFYWSVPSDPHTDFIAFAMIDAK-PHFVYELGSGLSYIR 1155
            ...::....:..||.|.|.|   .|    |..|...........||.|. .:.:..||       
  Fly  1795 TYRVRTQPGQNNRVSIPFVP---GG----WQKPDGRKASREEIMMILANVDNILIRLG------- 1845

 Worm  1156 GEPIPLNSWHTVRIERLAKDVSMFVNETLVKKHTSQSKNAHLDISKKDAL---YVGFVPEGIISH 1217
                        .::..|::|.: :|..|....|:........:.:|...   |||...|...|.
  Fly  1846 ------------YLDSTAREVDL-INIALDSAGTADKGLGSASLVEKCQCPPGYVGDSCESCASG 1897

 Worm  1218 KVRKLNVPFEGELQELRINELPINLISGVSKEVMDKVDVMEINEKEISKC---------DGASFD 1273
            .||:...|:.|..    :..:|.:..||...:....|...|      ..|         .|....
  Fly  1898 YVRQPGGPWLGHC----VPFIPDSCPSGTYGDPRRGVPCKE------CPCPLTGSNNFASGCQQS 1952

 Worm  1274 RKGSVVCRQHE 1284
            ..|.||||.:|
  Fly  1953 PDGDVVCRCNE 1963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agr-1NP_001022152.3 KAZAL 172..220 CDD:197624 13/55 (24%)
KAZAL 251..301 CDD:197624 11/54 (20%)
KAZAL 327..371 CDD:197624 9/43 (21%)
KAZAL 400..445 CDD:197624 9/44 (20%)
KAZAL 472..516 CDD:197624 9/43 (21%)
KAZAL 547..592 CDD:197624 11/70 (16%)
KAZAL 612..660 CDD:197624 17/133 (13%)
EGF_Lam 670..716 CDD:238012 9/58 (16%)
EGF_Lam 722..>759 CDD:238012 10/41 (24%)
KAZAL <819..852 CDD:197624 10/42 (24%)
LamG 1081..1236 CDD:238058 31/158 (20%)
LamG 1289..1450 CDD:238058
trolNP_001027038.3 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060 11/44 (25%)
LDLa 902..936 CDD:238060 7/35 (20%)
LDLa 956..990 CDD:238060 8/33 (24%)
LDLa 997..1030 CDD:238060 14/47 (30%)
LDLa 1033..1067 CDD:238060 9/43 (21%)
LDLa 1072..1105 CDD:238060 9/34 (26%)
LDLa 1133..1165 CDD:238060 8/52 (15%)
LDLa 1182..1215 CDD:238060 8/40 (20%)
LDLa 1221..1251 CDD:238060 5/29 (17%)
LDLa 1252..1286 CDD:238060 3/33 (9%)
LDLa 1292..1326 CDD:238060 10/37 (27%)
IG 1344..1421 CDD:214652 11/76 (14%)
Ig 1344..1405 CDD:299845 7/60 (12%)
LDLa 1439..1473 CDD:238060 6/37 (16%)
LDLa 1479..1513 CDD:238060 8/44 (18%)
LDLa 1522..1556 CDD:238060 8/33 (24%)
IG_like 1566..1649 CDD:214653 15/85 (18%)
Ig_Perlecan_D2_like 1574..1649 CDD:143220 13/77 (17%)
Laminin_B 1748..1864 CDD:278481 29/155 (19%)
EGF_Lam 1935..1989 CDD:238012 8/29 (28%)
Laminin_B 2113..2238 CDD:278481
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:278482
Laminin_B 2465..2587 CDD:278481
I-set 2686..2772 CDD:254352
Ig_2 2689..2771 CDD:290606
Ig 2779..2865 CDD:299845
IG_like 2798..2864 CDD:214653
Ig 2882..2965 CDD:299845
IG_like 2882..2950 CDD:214653
Ig 2977..3061 CDD:299845
IG_like 2984..3058 CDD:214653
IG_like 3074..3152 CDD:214653
Ig 3086..3153 CDD:299845
I-set 3155..3243 CDD:254352
IGc2 3171..3233 CDD:197706
IG 3371..3447 CDD:214652
IGc2 3377..3437 CDD:197706
Ig 3456..3534 CDD:299845
IG 3465..>3526 CDD:214652
Ig 3603..3665 CDD:299845
IG 3610..3683 CDD:214652
IG 3696..3762 CDD:214652
Ig 3704..3771 CDD:299845
LamG 3784..3929 CDD:238058
EGF 3952..3984 CDD:278437
LamG 4032..4185 CDD:238058
Laminin_G_2 4315..4444 CDD:280389
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D17288at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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