DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and Igsf9

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001139272.1 Gene:Igsf9 / 93842 MGIID:2135283 Length:1179 Species:Mus musculus


Alignment Length:1312 Identity:263/1312 - (20%)
Similarity:413/1312 - (31%) Gaps:469/1312 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   327 VVNNSVGGESVETVLTV------TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK 385
            :::....|.....|::|      :|.|...:.||.     |.|          |:..:.|::.|.
Mouse    13 IISQGADGRRKPEVVSVVGRAGESAVLGCDLLPPA-----GHP----------PLHVIEWLRFGF 62

  Fly   386 AI------GHSEP----------------VLRIESVKKEDKGMYQCFVR-NDQESAEAS------ 421
            .:      |...|                .|:||.::.||:|.|:|.|. .||.|.|..      
Mouse    63 LLPIFIQFGLYSPRIDPDYVGRVRLQTGASLQIEGLRVEDQGWYECRVLFLDQHSPEQDFANGSW 127

  Fly   422 AELKLGG--RFD--PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVG 482
            ..|.:..  :|.  ||::.:..:.|      :|.|:|||.|:|.|.::|:..|:.:....    |
Mouse   128 VHLTVNSPPQFQETPPLVLEVKELE------AVTLRCVARGSPQPYVTWKFRGQDLGKGQ----G 182

  Fly   483 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIV-AGET 546
            |....||.    |.|..|.....|.|.|.|.|..|...|:.:|.|.|.|.|......:.| :.:.
Mouse   183 QVQVQNGT----LWIRRVERGSAGDYTCQASSSEGSITHATQLLVLGPPVIVVPPSNSTVNSSQD 243

  Fly   547 LIVTCPVAGYPID-SIVWERDN-RALPINRKQ---KVFPNGTLIIENVERNSDQATYTCVAKNQE 606
            :.:.|....||.: :..|.:|. ....|:|.|   ::..:|:|.::..:.: |...||||..|  
Mouse   244 VSLACRAEAYPANLTYSWFQDGVNVFHISRLQSRVRILVDGSLWLQATQPD-DAGHYTCVPSN-- 305

  Fly   607 GYSARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQ 671
                                                                       ||  :.
Mouse   306 -----------------------------------------------------------GF--LH 309

  Fly   672 PQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQG 736
            |                |||| |:.            |..|...:|| :||...| ||      |
Mouse   310 P----------------PSAS-AYL------------TVLYPAQVTV-MPPETPL-PT------G 337

  Fly   737 SDAKVECKADGFPKPQ--VTWKKAVGDTPGEYKDLKKSDNIRV-EEGTLHVDNIQKTNEGYYLCE 798
            ....:.|.....| |.  |||.|     .|:...|.|.....: .||:|.:....:...|.|.|.
Mouse   338 MRGVIRCPVRANP-PLLFVTWTK-----DGQALQLDKFPGWSLGPEGSLIIALGNENALGEYSCT 396

  Fly   799 AINGIG-SGLSAVIMISVQAPPEFTEKLRNQTARR-GEPAVLQCEAKGEKPIGILWN------MN 855
            ..|.:| :|.|.|..:.::|||.|.::.:.:..:. |...::.|.|:|:.|..:.|.      ..
Mouse   397 PYNSLGTAGPSPVTQVLLKAPPAFIDQPKEEYFQEVGRELLIPCSARGDPPPIVSWAKVGRGLQG 461

  Fly   856 NMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINM-------- 912
            ..::|..|                 ||.::...:.....:.|.|:||......|.|:        
Mouse   462 QAQVDSNN-----------------SLVLRPLTKEAQGRWECSASNAVARVTTSTNVYVLGTSPH 509

  Fly   913 IVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEF-------KRSRASWSEI----- 965
            :|..|..:|..        :...:||...:||.. |.|:.:.:       .|:...|..:     
Mouse   510 VVTNVSVVPLP--------KGANVSWEPGFDGGY-LQRFSVWYTPLAKRPDRAHHDWVSLAVPIG 565

  Fly   966 -DRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTII-----TAEEAPSGKPQNI- 1023
             ..::|||....||         |...::|:|.:|:...||.|..|     |...||...|..| 
Mouse   566 ATHLLVPGLQAHAQ---------YQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAAPGLPPTEIP 621

  Fly  1024 -KVEP----VNQTTMR---VTWKPPPRTEWNGEIL-GYYVGYKLSNTNSSYVFETINFITEE--- 1076
             .:.|    |...|.|   :.|.||       |:: |...||.|.....|..:|    |.::   
Mouse   622 PPLSPPRGLVAVRTPRGVLLHWDPP-------ELIPGRLDGYILEGRQGSQGWE----ILDQGVA 675

  Fly  1077 GKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQP--------------PSD 1127
            |.|..|.:..|.....|...:.||                |:...|.|              ||.
Mouse   676 GTEIQLLVPGLIKDVLYEFRLVAF----------------ADSYVSDPSNVANISTSGLEVYPSR 724

  Fly  1128 TACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRHYKKTASSDTVLHGLKKYT 1192
            |....|..|.:..|.|..  ....||.....::.|.........:||.|:......::.      
Mouse   725 TQLPGLLPQPVLAGVVGG--VCFLGVAVLVSILAACLMNRRRAARRHRKRLRQDPPLIF------ 781

  Fly  1193 NYTMQVLATTAGGDGVRSVP----------IHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQ 1247
                    :..|..|..|.|          ...|..|    .|:..::|:.|..|     |||:.
Mouse   782 --------SPRGKSGSHSAPGSGSPDSVTKFKLQGSP----VPSLRQSLLWGEPA-----RPPSP 829

  Fly  1248 -------------------PNGIITQYTVYSKA------EGAETETKTQKVPHYQMSFE-ATELE 1286
                               |:|........:.:      |.:|..|..:::   ..||: ::...
Mouse   830 HPDSPLGRGPLPLEPICRGPDGRFVMGPTVAPSQEKLCLERSEPRTSAKRL---AQSFDCSSSSP 891

  Fly  1287 KNKPYEFWVTASTTIGEGQQSKSIVAMPS------------------------------DQVPAK 1321
            ...|....:|..:.:|:     .:.|:||                              :..||.
Mouse   892 SGVPQPLCITDISPVGQ-----PLAAVPSPLPGPGPLLQYLSLPFFREMNVDGDWPPLEEPTPAP 951

  Fly  1322 IASFDDTF---TATFKEDAKMP-----------CLAVG-APQPEIT----WKIKGVEFSANDRMR 1367
            ...|.|:.   |::|......|           .:.|| :.:|..|    |.:         |.|
Mouse   952 PPDFMDSQPCPTSSFLPPPDSPPANLRAVLPGTLMGVGVSSEPPYTALADWTL---------RER 1007

  Fly  1368 VLPD-------GSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDAL 1425
            |||.       |||..:|..|..|.                    .|.||        :|...|.
Mouse  1008 VLPGLLSAAPRGSLTSQSSGRGSAS--------------------FLRPP--------STAPSAG 1044

  Fly  1426 TVKLKPHEGDTA 1437
            ...|.|..|||:
Mouse  1045 GSYLSPAPGDTS 1056

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653 2/15 (13%)
Ig 269..340 CDD:143165 1/12 (8%)
IG_like 353..425 CDD:214653 22/100 (22%)
IGc2 361..413 CDD:197706 16/74 (22%)
I-set 433..527 CDD:254352 27/93 (29%)
IGc2 446..517 CDD:197706 22/70 (31%)
I-set 533..618 CDD:254352 18/90 (20%)
IGc2 544..607 CDD:197706 16/67 (24%)
Ig 641..714 CDD:143165 10/72 (14%)
IGc2 735..804 CDD:197706 18/71 (25%)
I-set 819..914 CDD:254352 18/109 (17%)
Ig 833..921 CDD:299845 18/101 (18%)
FN3 918..1011 CDD:238020 22/110 (20%)
FN3 1018..1116 CDD:238020 24/110 (22%)
FN3 1124..1217 CDD:238020 18/116 (16%)
FN3 1222..1312 CDD:238020 17/115 (15%)
Ig 1339..1406 CDD:299845 17/89 (19%)
FN3 1409..1499 CDD:238020 9/29 (31%)
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Igsf9NP_001139272.1 IG_like 28..110 CDD:214653 20/96 (21%)
Ig 136..223 CDD:386229 29/100 (29%)
Ig_3 227..305 CDD:372822 18/78 (23%)
Ig 341..404 CDD:386229 18/68 (26%)
Ig 436..500 CDD:319273 14/80 (18%)
FN3 508..599 CDD:238020 22/108 (20%)
FN3 625..715 CDD:238020 25/116 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 767..807 7/53 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 819..842 5/27 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 942..974 6/31 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1016..1079 16/69 (23%)
PDZ-binding 1177..1179
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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