Sequence 1: | NP_001246162.1 | Gene: | Dscam1 / 35652 | FlyBaseID: | FBgn0033159 | Length: | 2038 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_996816.3 | Gene: | USH2A / 7399 | HGNCID: | 12601 | Length: | 5202 | Species: | Homo sapiens |
Alignment Length: | 2363 | Identity: | 455/2363 - (19%) |
---|---|---|---|
Similarity: | 742/2363 - (31%) | Gaps: | 865/2363 - (36%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 PNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPM 68
Fly 69 PEI----IWIRSDGTAVG-DVPG---LRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARN---- 121
Fly 122 -------------QFGSIISRDVHVRAV---------------------------VSQHYEEDIH 146
Fly 147 KAFVIRGNSAILKCDIPSFVADFVNVISWHSDEKENFYPGTEY---------DGKYL--VLPSGE 200
Fly 201 L----HIREVGPEDGYKSYQCRTKHR---LTGE--------TRLS-------------ATKGRLV 237
Fly 238 -----ITEPVGS-------VSPQLSGNGNQEHITLTRVPKM---------GSVTLMCPAQA---- 277
Fly 278 ------YPVP--------FFRWYKFIEGT-TRKQAVVLNDRV------KQVSGTLIIKDA---VV 318
Fly 319 EDSGK-------YLCVV----NNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG 372
Fly 373 NPIKTV--------SWMKDGKAI--------------GHSEPV-LRIESVKK----------EDK 404
Fly 405 G--MYQCFVRN-------------DQES----AEASAELK----LGGRFDPPVIRQAFQ--EETM 444
Fly 445 EPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQ--------------YVTVNGDVVSYL 495
Fly 496 N--ITSVHANDGGLYKCIAKSK-VGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYP 557
Fly 558 IDSIVWERDNRALPINRKQKVFPNGTLII-----------ENVERNSDQATYTCVAKNQEGYSAR 611
Fly 612 GSLEVQV------------------------------MVLPQIVPFAYEDLINMGD--------- 637
Fly 638 ------------------------------------------SIDLFCQIQK--GDRPIKVHWS- 657
Fly 658 -------------FERSAG------------------DYGFDQVQP----QMRTNRISEKTSMIS 687
Fly 688 IPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQ 752
Fly 753 VTWKKAVGDTP----GEYKDL--KKSDNIRVEEGTLHVDNIQKTNEGYYL------------CEA 799
Fly 800 INGIGSGLSAVIMI-SVQAPP-------------------EFTEKLRNQTA-------------- 830
Fly 831 ---------RRGEPAVL------QCEAKG------------EKP----------------IGILW 852
Fly 853 NMNNMRLDPKNDNRYTIREEIL----------STGVMSSLSI----KRTER-----SDSAL---- 894
Fly 895 ---FTCVATNAFGSDDASINMI--VQEVPE--MPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYI 952
Fly 953 IEFKRSRASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPS 1017
Fly 1018 GKPQNIKVEP-----VNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEG 1077
Fly 1078 KEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGW 1142
Fly 1143 VSPPLESANGVIKTYK------VVYAPSDEWYDETKRHYKKTASSDTVLHGLKKYTNYTMQVLAT 1201
Fly 1202 TAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAET 1266
Fly 1267 ETKTQKV--PHYQMSFEATELEKNKP---YEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFD 1326
Fly 1327 DTFTATFKEDAKM----PCLAV----GAPQPEITWKIKGVEFSANDRMRVLPDGSLLIKSVNRQD 1383
Fly 1384 AG------------------------------DYSCHAENSIAK--DSITHKLIVLAPPQ---SP 1413
Fly 1414 --HVTLSATTTDALTVKLKP------HEGDTAPLHGYTLHYKPEFGEWETSEVSVDSQKHNIEGL 1470
Fly 1471 LCGSRYQV---YATGFNNIGAGEASDI-----------------LNTRTKGQKPKLPEKPRFIEV 1515
Fly 1516 SSNSVSLHFKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVKPDNNYVVL-------DLEPATWY 1573
Fly 1574 NLRITAHNSAGFTVAEY-DFATLTVTGGTIAPLDDGS--------------------------GH 1611
Fly 1612 GNVHTRIRLPAWMPEWLDLNFMVPLIATV-----------VVVAVGICVVCVALSRRRADDMRGG 1665
Fly 1666 QKDVYYDVVYNQTMGP-GATL------------DKRRPDLRDELGYIAPPNRKLPPV----PGSN 1713
Fly 1714 YNTCDRIKRGRGG----LRSNHS 1732 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dscam1 | NP_001246162.1 | Ig | 38..130 | CDD:299845 | 26/116 (22%) |
IG | 57..133 | CDD:214652 | 22/100 (22%) | ||
IG_like | 267..343 | CDD:214653 | 23/114 (20%) | ||
Ig | 269..340 | CDD:143165 | 22/109 (20%) | ||
IG_like | 353..425 | CDD:214653 | 21/123 (17%) | ||
IGc2 | 361..413 | CDD:197706 | 14/86 (16%) | ||
I-set | 433..527 | CDD:254352 | 23/112 (21%) | ||
IGc2 | 446..517 | CDD:197706 | 18/87 (21%) | ||
I-set | 533..618 | CDD:254352 | 17/95 (18%) | ||
IGc2 | 544..607 | CDD:197706 | 12/73 (16%) | ||
Ig | 641..714 | CDD:143165 | 16/110 (15%) | ||
IGc2 | 735..804 | CDD:197706 | 13/86 (15%) | ||
I-set | 819..914 | CDD:254352 | 28/198 (14%) | ||
Ig | 833..921 | CDD:299845 | 26/151 (17%) | ||
FN3 | 918..1011 | CDD:238020 | 22/94 (23%) | ||
FN3 | 1018..1116 | CDD:238020 | 27/102 (26%) | ||
FN3 | 1124..1217 | CDD:238020 | 23/98 (23%) | ||
FN3 | 1222..1312 | CDD:238020 | 28/94 (30%) | ||
Ig | 1339..1406 | CDD:299845 | 18/106 (17%) | ||
FN3 | 1409..1499 | CDD:238020 | 22/120 (18%) | ||
FN3 | 1504..1584 | CDD:238020 | 19/86 (22%) | ||
Dscam_C | 1890..2008 | CDD:289151 | |||
USH2A | NP_996816.3 | LamGL | 146..283 | CDD:214722 | |
Laminin_N | 291..516 | CDD:413488 | |||
EGF_Lam | 517..565 | CDD:238012 | |||
EGF_Lam | 574..639 | CDD:238012 | |||
Laminin_EGF | 641..691 | CDD:395007 | |||
EGF_Lam | 694..733 | CDD:214543 | |||
Laminin_EGF | 747..795 | CDD:395007 | |||
EGF_Lam | 794..844 | CDD:238012 | |||
EGF_Lam | 847..897 | CDD:214543 | |||
EGF_Lam | 900..948 | CDD:238012 | |||
EGF_Lam | 950..1000 | CDD:238012 | |||
EGF_Lam | 1001..>1037 | CDD:238012 | |||
fn3 | 1058..1132 | CDD:394996 | |||
fn3 | 1150..1227 | CDD:394996 | |||
FN3 | 1242..1357 | CDD:238020 | |||
FN3 | 1368..1451 | CDD:214495 | |||
LamG | 1519..1678 | CDD:238058 | |||
LamG | 1716..1868 | CDD:238058 | |||
FN3 | 1956..2051 | CDD:238020 | |||
FN3 | 2241..2313 | CDD:238020 | |||
FN3 | 2329..2428 | CDD:238020 | |||
FN3 | 2432..2528 | CDD:238020 | |||
FN3 | 2533..2619 | CDD:238020 | |||
FN3 | 2621..2719 | CDD:238020 | |||
FN3 | 2724..2799 | CDD:238020 | |||
FN3 | 2818..2920 | CDD:238020 | |||
FN3 | 2925..3015 | CDD:238020 | 6/26 (23%) | ||
FN3 | 3026..>3087 | CDD:238020 | 17/70 (24%) | ||
FN3 | <3449..3494 | CDD:238020 | 9/46 (20%) | ||
FN3 | 3503..3586 | CDD:238020 | 15/82 (18%) | ||
FN3 | 3590..3676 | CDD:238020 | 20/94 (21%) | ||
FN3 | 3680..3767 | CDD:238020 | 20/105 (19%) | ||
fn3 | 3777..3856 | CDD:394996 | 7/79 (9%) | ||
FN3 | 3866..3960 | CDD:238020 | 18/117 (15%) | ||
FN3 | 3964..4057 | CDD:238020 | 20/107 (19%) | ||
fn3 | 4161..4247 | CDD:394996 | 14/91 (15%) | ||
FN3 | 4268..4351 | CDD:238020 | 20/89 (22%) | ||
fn3 | 4357..4428 | CDD:394996 | 26/92 (28%) | ||
FN3 | 4444..4516 | CDD:238020 | 21/89 (24%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 4518..4541 | 5/22 (23%) | |||
FN3 | 4529..4627 | CDD:238020 | 34/117 (29%) | ||
FN3 | 4636..4730 | CDD:238020 | 18/102 (18%) | ||
FN3 | 4826..4927 | CDD:238020 | 26/120 (22%) | ||
PDZ-binding | 5200..5202 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3510 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |