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Protein Alignment Dscam1 and kirrel3a

DIOPT Version :10

Sequence 1:	NP_001246162.1	Gene:	Dscam1 / 35652	FlyBaseID:	FBgn0033159	Length:	2038	Species:	Drosophila melanogaster
Sequence 2:	XP_068080114.1	Gene:	kirrel3a / 571887	ZFINID:	ZDB-GENE-091117-44	Length:	788	Species:	Danio rerio

Alignment Length:	826	Identity:	168/826 - (20%)
Similarity:	272/826 - (32%)	Gaps:	258/826 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly   532 YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIEN-------- 588
            :|:|.....|||||.:.:.|.:.||. ..::|.:|..||.:||....:|...:|.::
Zfish    37 FIQQPHDLVIVAGEPVTLPCTIIGYQ-GMVLWVKDGLALGVNRDLSGYPRYDVIGDHSKGEYHLL 100

  Fly   589 VERNS--DQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRP 651
            :||..  |..::.|.|....|.|....|.|.|.....::..|....:..|||::|.|........
Zfish   101 IERTELVDDGSFECQAIQVAGRSRPAQLTVLVPPDDPVIIGAPVVSLRAGDSLNLTCHANNAKPA 165

  Fly   652 IKVHWSFERSAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAHTGRD-TCIASNKA-------- 707
            ..:.| ........|....:..:|..:.....|.:.| |||...:|:. ||.|||||
Zfish   166 ASIIW-IRNGEVINGAAYTKTLLRDGKRESTVSTLHI-SASNIESGQQITCRASNKAAPNGKEAT 228

  Fly   708 ----------------------------------------------------------------- 707

Zfish   229 VTIDIQHFPLVNLSVEPQPVLEGNLVKFHCAAKANPPVTHYRWAKGGSMITDATGDTYEVLVDHS 293

  Fly   708 --------------GTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKA 758
                          |:|..|.::.|...||...||......:||||...|...|.|...:.|
Zfish   294 FFTEPVSCEVTNALGSTNISRNVDVYFGPRLAAEPQSLQVDRGSDAVFSCAWIGNPSLTIVW--- 355

  Fly   759 VGDTPGEYKDLKKSDNIRV-EEGTLHVDNIQKTNEGYYLCEAI---NGIGSGLSAVIMISVQAPP 819
                      :|:...:.: .|.||.:..:::.:.|.|:|.|:   .|:|   ...:|::|..||
Zfish   356 ----------MKRGHGVVLSNENTLTLKAVRQEDAGKYVCRAVVPRVGVG---EKEVMLTVNGPP 407

  Fly   820 EFTEKLRNQTARRGEPAVLQCEAKGEKPIG-ILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLS 883
            ..: ..:.|.|..||...::|..:...|.. |.|:.....|:.....|||:.......||:|:|:
Zfish   408 SIS-STQTQQALYGEKGQIKCFIRSTPPPDRIAWSWKETVLESGTSGRYTVETVSTEEGVISTLT 471

  Fly   884 IKRTERSD-SALFTCVATNAFGSDDASINMIVQEVPEMPYALKV--------------------- 926
            ::....:| ..::.|.|.|:||||...|.:..|....:...:.|
Zfish   472 MRNIVPTDFQTIYNCTAWNSFGSDTEIIRLKEQGSLRLAVIIGVAVGAFLALIVLIGTLGAFCCA 536

  Fly   927 --------LDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSR------ASWSEIDRVIVPGHTTEA 977
                    |..|...|.||..|         |.|....:|.      ::.::|...||......|
Zfish   537 RLQRKDMHLVMSSLPVSLSSRQ---------REISGTVKSENLKGVVSAKNDIRVEIVHKDHNAA 592

  Fly   978 QVQKLSPATTYNIRIVAENAIGTSQSS--EAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPP 1040
            :    .|....|::.:........|.|  :.:.::..||.   :.|:|| :|.|
Zfish   593 R----EPEEHSNVKQMMMERADFQQESVLKQLEVLQEEER---ELQHIK-DPTN----------- 638

  Fly  1041 PRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQN--------LRVYTQYSVVI 1097
                          ||...||.......||:....:    |.|::|        .||.|..|..
Zfish   639 --------------GYYSVNTFKEQPTPTISLTANQ----NAEVRNPATATLGKHRVPTGMSYT- 684

  Fly  1098 QAFNKIGAGP--------------------LSEEEKQFTAEGTPSQPPS--DTAC-TTLTSQTIR 1139
            ..:|.:||||                    |.|.|.|   .|:.|...|  ||.| ::::|.:.:
Zfish   685 NIYNTLGAGPNRLYDYSQRFVLGMGSSSIELCEREFQ---RGSLSDSSSFQDTQCDSSVSSYSKQ 746

  Fly  1140 VGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRHYKKTASSDTVL 1185
            .|:|.....|...|                .:..||.:::|.::.|
Zfish   747 DGYVQFDKASKASV----------------SSSSHYSQSSSQNSDL 776

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.