DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and dscama

DIOPT Version :10

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_068079922.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2037 Species:Danio rerio


Alignment Length:1691 Identity:544/1691 - (32%)
Similarity:855/1691 - (50%) Gaps:89/1691 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV---FPPFR 102
            |:......:.|:::||..:.|.|:..|...:.|..:.|....:|||:|.:..:|.|.   |||  
Zfish    38 FVNASLQEVVFASTTGTLVPCPAAAVPPATLRWYLATGEESYNVPGIRHVHPNGTLQIFHFPP-- 100

  Fly   103 AEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVSQHYEEDIHKAFVIRGNSAILKCDIPSFVA 167
             ..:.:.:|...|.|.|.|..|.|.|:|||::||:.:.|...:.....:||:.|:.||.|||.|.
Zfish   101 -SSFSKVIHDNTYYCTAENPSGKIRSQDVHIKAVLREPYTVRVADQTAMRGSVAVFKCIIPSSVE 164

  Fly   168 DFVNVISWHSDEKENFYPGTEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSAT 232
            :::.|:||..|.    .|... ..::|:..:|.|:|.:|..||...:|:|.|:||.|.|||.|.:
Zfish   165 NYITVVSWERDT----VPLVS-GARFLITSTGALYILDVQKEDELFNYRCMTRHRYTSETRQSNS 224

  Fly   233 KGRLVITEPVGSVSPQLSGNGNQEHITLTRVPKMGSVTLMCPAQAYPVPFFRWYKFIEGTTRKQA 297
            ....|..:|..|....|.|...:|.:...|      |.|.|.|..:|.|.:||.|      ..:.
Zfish   225 ARLFVPADPSNSAPAILDGFEKREVMASHR------VELPCKASGHPAPKYRWLK------NNRP 277

  Fly   298 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 362
            :..:.|.:|....|:|:.|...|:|.|:|.|.||.|...|...|||..||.|.:.|.......|.
Zfish   278 LESDSRFRQSVTGLLIERAQPSDTGSYVCEVWNSYGNAEVIGRLTVKEPLKAVVSPRKVKGSVGS 342

  Fly   363 PAVFTCQYTGNPIKTVSWMKDGKAI---------GHSEPVLRIESVKKEDKGMYQCFVRNDQESA 418
            ....:|..||:....:||.::|..|         |.::..|.::.:.|.|.|:||||.|..:.||
Zfish   343 QVSLSCSVTGSDEFELSWYRNGDKINTGANIRMNGINKENLVMDGMAKSDGGVYQCFSRKAKMSA 407

  Fly   419 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQ 483
            :...::.|  ....|.|..||.|:.:.|...|.|.|...|.|.|.|:|.||.:.:|.:.|:::..
Zfish   408 QDFVQVIL--EDGTPKILSAFSEKVVGPNDFVSLTCHVKGTPQPAITWTLDDEVVAKDSRHRIVH 470

  Fly   484 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLI 548
            .:|..|:|||||||:.:...|.|:|:|...:..|...:.|::||.|...||.|:....:||..:.
Zfish   471 SITAEGNVVSYLNISHIQVRDSGVYRCTCNNSAGTVSYQARINVRGSADIRPMKNLTAIAGWDMY 535

  Fly   549 VTCPVAGYPIDSIVWERDNRALPINRKQKVFP-NGTLIIENVERNSDQATYTCVAKNQEGYSARG 612
            :.|.|.|||..||.|.:::..||.|.:|:.|. ||||.:.||::..|:..|:|..:.|.......
Zfish   536 IHCHVIGYPYYSIKWFKNSNLLPFNDRQRAFENNGTLKLLNVQKELDEGEYSCHVQVQPQLFKNQ 600

  Fly   613 SLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHW-----SFERSAGDYGFDQVQP 672
            |:.|.|.|.|.|.||.: ...::|..:.:.|.::.||.||.:.|     |...|.| ...|.:  
Zfish   601 SVHVTVKVPPFIQPFEF-PRYSIGHRVFVPCVVRSGDLPISITWEKDGKSINASLG-VTIDNI-- 661

  Fly   673 QMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGS 737
                    :.||.:.|.:....|.|..||||.|.|....|...|.|.||||:.::|.|:....|.
Zfish   662 --------DFTSSLRISNLQRVHNGTYTCIAQNDAAVVKYQSQLIVRVPPRFKVQPQDQDGIYGK 718

  Fly   738 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE---EGTLHVDNIQKTNEGYYLCEA 799
            ...:.|.|||.|:|.:.||.:.|....:::.:..:...||:   .|:|.:.::.:.:.|||||:.
Zfish   719 SVILNCSADGEPRPTIEWKYSKGAGVPQFQPIALNSGFRVQLLGNGSLLIKHVLEEDAGYYLCKV 783

  Fly   800 INGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILW------NMNNMR 858
            .|.:|:.:|..:.::|:.|...|....|..|.:||...:.|:|.|||||.:.|      ...:..
Zfish   784 SNDVGADVSKSMYLNVKIPAMITSYPNNSLATKGEKIEMSCKAHGEKPIMVRWEKEVEKEKQSHM 848

  Fly   859 LDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYA 923
            ::| :..|:|:..:.:...|:|:|.|..|.|.||..|:|.|.|::|.|...:.:.|||.||.| .
Zfish   849 INP-DMWRHTVTVKNVGDEVVSTLQIYPTMREDSGFFSCHAINSYGEDRGILQLTVQEPPEPP-K 911

  Fly   924 LKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASWSEIDRV-IVPGHTTEAQVQKLSPATT 987
            :::.:...|::.|.|...:||||.:..|.||.|....:|....|. .|.....:|.:.:|.|::|
Zfish   912 VEIREVKERTIALRWTMGFDGNSLITGYDIECKNKTETWERARRTRDVSPTLNQATIIELHPSST 976

  Fly   988 YNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGY 1052
            ||||:.|:|.||.|:.|..:|:.|.|..|.|.||::.:|.:...:::||||.|.:...||.|.||
Zfish   977 YNIRMFAKNHIGDSEPSNELTVTTDEADPEGPPQDVTLEAITSQSIKVTWKAPLKHLQNGVIRGY 1041

  Fly  1053 YVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTA 1117
            .|.::..:||.|:.|..|: :...|:..:|.|.||:.:.:|.||:||.|..|.||.|.|.:..|.
Zfish  1042 QVCHREHSTNGSHQFVCIS-VEATGETESLSLNNLKKFAEYEVVVQASNSAGPGPASSEVRATTM 1105

  Fly  1118 EGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVY---APSDEWYDETKRHYKKTA 1179
            |..||:.|.....|..:.::|.:.|.:|..|:.|||::.::::|   .|..| ..|.:.  ..|.
Zfish  1106 EDVPSRAPEKVVATAASPESISLSWQTPAREALNGVLQGFRIIYWANLPDGE-LGEIRN--VTTH 1167

  Fly  1180 SSDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRP 1244
            .:...|.||:|||||::||||.|..||||||..|:.:|:.|||..|..|||....::.:.|||.|
Zfish  1168 KAPLELEGLEKYTNYSIQVLAFTRAGDGVRSDQIYIRTKEDVPGPPGGVKAAAASSSVVYVSWLP 1232

  Fly  1245 PAQPNGIITQYTVYSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKS 1309
            |.:.||:|.:|||:..:......::.:..|. :.......|.:|:.|..||.|.|..|.|..|..
Zfish  1233 PLKLNGVIRKYTVFCSSTSPTVVSEFEVAPD-EFLHRVHNLSRNRKYNIWVMAVTAAGRGNSSDV 1296

  Fly  1310 IVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITW-KIKGVEFSA--NDRMRVLPD 1371
            |...|..:.||||.:|..|.|..:..|..:||.|||.|.|.|.| |..|....|  :.|..:..:
Zfish  1297 ITVEPLAKAPAKILTFSGTVTTPWMRDVVLPCRAVGDPPPAIKWLKESGSPAPAVIDGRRSIHGN 1361

  Fly  1372 GSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLKPHEGDT 1436
            ||.:||:|..:|:|.|:|.|.|:...|.|...|.|..||..|.:|::.|||.::||...|.:...
Zfish  1362 GSFIIKTVKAEDSGYYTCVASNNYGTDEIILNLQVQVPPDQPRLTVTKTTTTSITVTWTPGDNGG 1426

  Fly  1437 APLHGYTLHYKPEFGE-WETSEVSVDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNTRTK 1500
            :.:.||.|.|..:..| |.:..:|...:.:.:|.|.||:.|:...|..|.:|.|..|:|:..:|.
Zfish  1427 SSIRGYILQYSEDNSEKWGSISISPSERSYRLENLNCGTWYKFTLTAQNAVGPGRISEIIEAKTH 1491

  Fly  1501 GQKPKL-PEKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVKPDNNYVV 1564
            |::|:. .|:..|..::..||.|:...|.|||||::.|.:|.:..:...|.: :.......:|.:
Zfish  1492 GKEPQFSKEQELFTSINGTSVKLNLIGWNDGGCPITSFTLEYRPLESPVWTK-AKRTSLSKSYNL 1555

  Fly  1565 LDLEPATWYNLRITAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRLPAWMPEWLD 1629
            |||:.||||.|::..:||||.......||||:..|.||.||        |.|.::.|........
Zfish  1556 LDLQEATWYELQMKVYNSAGLAEKRVKFATLSYDGSTIPPL--------VKTLVKDPVKKTSNEG 1612

  Fly  1630 LNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDV--YYDVVYNQTMGPGATLDKRRPDL 1692
            :..|| .|:.::|..|.:.|:.:.|.|||.:......:|.  ..:::.::...|..|::|::..|
Zfish  1613 MKMMV-TISCILVGMVLLFVLLMVLRRRRREQRLKRLRDAKSLAEMLMSKNTRPSDTMNKQQQTL 1676

  Fly  1693 R 1693
            |
Zfish  1677 R 1677

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 IgI_1_Dscam 38..136 CDD:409547 29/97 (30%)