DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and dscama

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:1691 Identity:544/1691 - (32%)
Similarity:855/1691 - (50%) Gaps:89/1691 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV---FPPFR 102
            |:......:.|:::||..:.|.|:..|...:.|..:.|....:|||:|.:..:|.|.   |||  
Zfish    26 FVNASLQEVVFASTTGTLVPCPAAAVPPATLRWYLATGEESYNVPGIRHVHPNGTLQIFHFPP-- 88

  Fly   103 AEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVSQHYEEDIHKAFVIRGNSAILKCDIPSFVA 167
             ..:.:.:|...|.|.|.|..|.|.|:|||::||:.:.|...:.....:||:.|:.||.|||.|.
Zfish    89 -SSFSKVIHDNTYYCTAENPSGKIRSQDVHIKAVLREPYTVRVADQTAMRGSVAVFKCIIPSSVE 152

  Fly   168 DFVNVISWHSDEKENFYPGTEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSAT 232
            :::.|:||..|.    .|... ..::|:..:|.|:|.:|..||...:|:|.|:||.|.|||.|.:
Zfish   153 NYITVVSWERDT----VPLVS-GARFLITSTGALYILDVQKEDELFNYRCMTRHRYTSETRQSNS 212

  Fly   233 KGRLVITEPVGSVSPQLSGNGNQEHITLTRVPKMGSVTLMCPAQAYPVPFFRWYKFIEGTTRKQA 297
            ....|..:|..|....|.|...:|.:...|      |.|.|.|..:|.|.:||.|      ..:.
Zfish   213 ARLFVPADPSNSAPAILDGFEKREVMASHR------VELPCKASGHPAPKYRWLK------NNRP 265

  Fly   298 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 362
            :..:.|.:|....|:|:.|...|:|.|:|.|.||.|...|...|||..||.|.:.|.......|.
Zfish   266 LESDSRFRQSVTGLLIERAQPSDTGSYVCEVWNSYGNAEVIGRLTVKEPLKAVVSPRKVKGSVGS 330

  Fly   363 PAVFTCQYTGNPIKTVSWMKDGKAI---------GHSEPVLRIESVKKEDKGMYQCFVRNDQESA 418
            ....:|..||:....:||.::|..|         |.::..|.::.:.|.|.|:||||.|..:.||
Zfish   331 QVSLSCSVTGSDEFELSWYRNGDKINTGANIRMNGINKENLVMDGMAKSDGGVYQCFSRKAKMSA 395

  Fly   419 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQ 483
            :...::.|  ....|.|..||.|:.:.|...|.|.|...|.|.|.|:|.||.:.:|.:.|:::..
Zfish   396 QDFVQVIL--EDGTPKILSAFSEKVVGPNDFVSLTCHVKGTPQPAITWTLDDEVVAKDSRHRIVH 458

  Fly   484 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLI 548
            .:|..|:|||||||:.:...|.|:|:|...:..|...:.|::||.|...||.|:....:||..:.
Zfish   459 SITAEGNVVSYLNISHIQVRDSGVYRCTCNNSAGTVSYQARINVRGSADIRPMKNLTAIAGWDMY 523

  Fly   549 VTCPVAGYPIDSIVWERDNRALPINRKQKVFP-NGTLIIENVERNSDQATYTCVAKNQEGYSARG 612
            :.|.|.|||..||.|.:::..||.|.:|:.|. ||||.:.||::..|:..|:|..:.|.......
Zfish   524 IHCHVIGYPYYSIKWFKNSNLLPFNDRQRAFENNGTLKLLNVQKELDEGEYSCHVQVQPQLFKNQ 588

  Fly   613 SLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHW-----SFERSAGDYGFDQVQP 672
            |:.|.|.|.|.|.||.: ...::|..:.:.|.::.||.||.:.|     |...|.| ...|.:  
Zfish   589 SVHVTVKVPPFIQPFEF-PRYSIGHRVFVPCVVRSGDLPISITWEKDGKSINASLG-VTIDNI-- 649

  Fly   673 QMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGS 737
                    :.||.:.|.:....|.|..||||.|.|....|...|.|.||||:.::|.|:....|.
Zfish   650 --------DFTSSLRISNLQRVHNGTYTCIAQNDAAVVKYQSQLIVRVPPRFKVQPQDQDGIYGK 706

  Fly   738 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE---EGTLHVDNIQKTNEGYYLCEA 799
            ...:.|.|||.|:|.:.||.:.|....:::.:..:...||:   .|:|.:.::.:.:.|||||:.
Zfish   707 SVILNCSADGEPRPTIEWKYSKGAGVPQFQPIALNSGFRVQLLGNGSLLIKHVLEEDAGYYLCKV 771

  Fly   800 INGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILW------NMNNMR 858
            .|.:|:.:|..:.::|:.|...|....|..|.:||...:.|:|.|||||.:.|      ...:..
Zfish   772 SNDVGADVSKSMYLNVKIPAMITSYPNNSLATKGEKIEMSCKAHGEKPIMVRWEKEVEKEKQSHM 836

  Fly   859 LDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYA 923
            ::| :..|:|:..:.:...|:|:|.|..|.|.||..|:|.|.|::|.|...:.:.|||.||.| .
Zfish   837 INP-DMWRHTVTVKNVGDEVVSTLQIYPTMREDSGFFSCHAINSYGEDRGILQLTVQEPPEPP-K 899

  Fly   924 LKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASWSEIDRV-IVPGHTTEAQVQKLSPATT 987
            :::.:...|::.|.|...:||||.:..|.||.|....:|....|. .|.....:|.:.:|.|::|
Zfish   900 VEIREVKERTIALRWTMGFDGNSLITGYDIECKNKTETWERARRTRDVSPTLNQATIIELHPSST 964

  Fly   988 YNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGY 1052
            ||||:.|:|.||.|:.|..:|:.|.|..|.|.||::.:|.:...:::||||.|.:...||.|.||
Zfish   965 YNIRMFAKNHIGDSEPSNELTVTTDEADPEGPPQDVTLEAITSQSIKVTWKAPLKHLQNGVIRGY 1029

  Fly  1053 YVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTA 1117
            .|.::..:||.|:.|..|: :...|:..:|.|.||:.:.:|.||:||.|..|.||.|.|.:..|.
Zfish  1030 QVCHREHSTNGSHQFVCIS-VEATGETESLSLNNLKKFAEYEVVVQASNSAGPGPASSEVRATTM 1093

  Fly  1118 EGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVY---APSDEWYDETKRHYKKTA 1179
            |..||:.|.....|..:.::|.:.|.:|..|:.|||::.::::|   .|..| ..|.:.  ..|.
Zfish  1094 EDVPSRAPEKVVATAASPESISLSWQTPAREALNGVLQGFRIIYWANLPDGE-LGEIRN--VTTH 1155

  Fly  1180 SSDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRP 1244
            .:...|.||:|||||::||||.|..||||||..|:.:|:.|||..|..|||....::.:.|||.|
Zfish  1156 KAPLELEGLEKYTNYSIQVLAFTRAGDGVRSDQIYIRTKEDVPGPPGGVKAAAASSSVVYVSWLP 1220

  Fly  1245 PAQPNGIITQYTVYSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKS 1309
            |.:.||:|.:|||:..:......::.:..|. :.......|.:|:.|..||.|.|..|.|..|..
Zfish  1221 PLKLNGVIRKYTVFCSSTSPTVVSEFEVAPD-EFLHRVHNLSRNRKYNIWVMAVTAAGRGNSSDV 1284

  Fly  1310 IVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITW-KIKGVEFSA--NDRMRVLPD 1371
            |...|..:.||||.:|..|.|..:..|..:||.|||.|.|.|.| |..|....|  :.|..:..:
Zfish  1285 ITVEPLAKAPAKILTFSGTVTTPWMRDVVLPCRAVGDPPPAIKWLKESGSPAPAVIDGRRSIHGN 1349

  Fly  1372 GSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLKPHEGDT 1436
            ||.:||:|..:|:|.|:|.|.|:...|.|...|.|..||..|.:|::.|||.::||...|.:...
Zfish  1350 GSFIIKTVKAEDSGYYTCVASNNYGTDEIILNLQVQVPPDQPRLTVTKTTTTSITVTWTPGDNGG 1414

  Fly  1437 APLHGYTLHYKPEFGE-WETSEVSVDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNTRTK 1500
            :.:.||.|.|..:..| |.:..:|...:.:.:|.|.||:.|:...|..|.:|.|..|:|:..:|.
Zfish  1415 SSIRGYILQYSEDNSEKWGSISISPSERSYRLENLNCGTWYKFTLTAQNAVGPGRISEIIEAKTH 1479

  Fly  1501 GQKPKL-PEKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVKPDNNYVV 1564
            |::|:. .|:..|..::..||.|:...|.|||||::.|.:|.:..:...|.: :.......:|.:
Zfish  1480 GKEPQFSKEQELFTSINGTSVKLNLIGWNDGGCPITSFTLEYRPLESPVWTK-AKRTSLSKSYNL 1543

  Fly  1565 LDLEPATWYNLRITAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRLPAWMPEWLD 1629
            |||:.||||.|::..:||||.......||||:..|.||.||        |.|.::.|........
Zfish  1544 LDLQEATWYELQMKVYNSAGLAEKRVKFATLSYDGSTIPPL--------VKTLVKDPVKKTSNEG 1600

  Fly  1630 LNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDV--YYDVVYNQTMGPGATLDKRRPDL 1692
            :..|| .|:.::|..|.:.|:.:.|.|||.:......:|.  ..:::.::...|..|::|::..|
Zfish  1601 MKMMV-TISCILVGMVLLFVLLMVLRRRRREQRLKRLRDAKSLAEMLMSKNTRPSDTMNKQQQTL 1664

  Fly  1693 R 1693
            |
Zfish  1665 R 1665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 26/91 (29%)
IG 57..133 CDD:214652 24/78 (31%)
IG_like 267..343 CDD:214653 24/75 (32%)
Ig 269..340 CDD:143165 23/70 (33%)
IG_like 353..425 CDD:214653 21/80 (26%)
IGc2 361..413 CDD:197706 17/60 (28%)
I-set 433..527 CDD:254352 33/93 (35%)
IGc2 446..517 CDD:197706 26/70 (37%)
I-set 533..618 CDD:254352 30/85 (35%)
IGc2 544..607 CDD:197706 24/63 (38%)
Ig 641..714 CDD:143165 22/77 (29%)
IGc2 735..804 CDD:197706 20/71 (28%)
I-set 819..914 CDD:254352 30/100 (30%)
Ig 833..921 CDD:299845 32/93 (34%)
FN3 918..1011 CDD:238020 32/93 (34%)
FN3 1018..1116 CDD:238020 36/97 (37%)
FN3 1124..1217 CDD:238020 34/95 (36%)
FN3 1222..1312 CDD:238020 28/89 (31%)
Ig 1339..1406 CDD:299845 27/69 (39%)
FN3 1409..1499 CDD:238020 28/90 (31%)
FN3 1504..1584 CDD:238020 26/80 (33%)
Dscam_C 1890..2008 CDD:289151
dscamaXP_021334866.1 Ig 124..217 CDD:325142 32/97 (33%)
I-set 236..311 CDD:254352 26/86 (30%)
IG_like 321..402 CDD:214653 21/80 (26%)
I-set 408..502 CDD:333254 33/93 (35%)
IGc2 524..579 CDD:197706 22/54 (41%)
Ig 614..679 CDD:319273 21/75 (28%)
Ig_DSCAM 708..787 CDD:143211 21/78 (27%)
Ig 805..898 CDD:325142 32/93 (34%)
FN3 894..988 CDD:238020 32/94 (34%)
FN3 995..1092 CDD:238020 36/97 (37%)
fn3 1100..1186 CDD:306538 31/88 (35%)
fn3 1199..1282 CDD:306538 25/83 (30%)
Ig 1312..1377 CDD:319273 24/64 (38%)
fn3 1405..1471 CDD:306538 18/65 (28%)
FN3 1492..1563 CDD:238020 24/71 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4915
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 917 1.000 Inparanoid score I353
OMA 1 1.010 - - QHG47134
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6394
orthoMCL 1 0.900 - - OOG6_101656
Panther 1 1.100 - - O PTHR10075
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1391
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.840

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