DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and ptprq

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_021323628.1 Gene:ptprq / 555426 ZFINID:ZDB-GENE-050419-183 Length:2896 Species:Danio rerio


Alignment Length:1825 Identity:360/1825 - (19%)
Similarity:612/1825 - (33%) Gaps:625/1825 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 SATKGRLVIT--------------EPVGSVSPQLSGNGNQEHITLTRVPKMGSVTL----MCPAQ 276
            |:...|:::|              |.|||....||.     .:.:...|.:.|..:    |||  
Zfish   460 SSPVSRILVTTIESLPAAPSKPEGERVGSTGILLSW-----RMPMPLDPSIHSFVIRYKEMCP-- 517

  Fly   277 AYPVP-FFRWYKFIE-----------GTTR--KQAVVLNDRVKQVSGTLIIK------------D 315
             ||.| |....|.::           |.|.  |.|.|....|...|.:|..|            .
Zfish   518 -YPDPSFTEITKSLDIPETLLNTLTPGATYNIKVAAVNKAGVGPFSQSLYYKTAEAPPGLVSNLT 581

  Fly   316 AVVED--------------SG---KYLCVVNNSVGGESVET-------VLTVTAP--------LS 348
            |..||              :|   |:...|.::..|:.|.|       ::....|        ||
Zfish   582 AFAEDHTSVIVTWFLPVRINGLITKFAVKVKHARTGQIVRTKELNAEDIMNGALPHCNDAADILS 646

  Fly   349 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSEPVLRIESVKKEDKGMYQCFVRN 413
            .....|:|          |.|.|...:..::......|...|.|:    |||.::...|..:|  
Zfish   647 RGTPSPSQ----------TSQLTSAVLPPITLSAVPPASIWSVPI----SVKIDELRPYTPYV-- 695

  Fly   414 DQESAEASAELKLG-GRFDPPVIR--QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 475
                .|.||....| |:....::|  :|..|   :|..:|.|:.:.  :.:..::||  ..||. 
Zfish   696 ----FEVSAFTSDGEGQIASTMVRMPEAAPE---DPPQNVVLRNIT--SKSVSLTWE--PPKII- 748

  Fly   476 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHS--------AKLNVYGLPY 532
                 .|::        ||  :..:|:::|           .::|:|        ..|..|...|
Zfish   749 -----TGRF--------SY--VIQLHSSEG-----------LISENSTIDQMFIYTGLTPYTTYY 787

  Fly   533 IRQMEKKAIVAGETLIVT--------CPVAGY-----------PIDSIVWER-DNRALPINRKQK 577
            |..|.|.|..||...::.        |.|..|           .:..:..|. |:.::.::.:..
Zfish   788 IHVMAKSAGAAGPAAVINITTLAEVHCKVCSYLCVFISMSAPSAVSLLKAEAVDSTSVRLSWRSP 852

  Fly   578 VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLF 642
            :.|||.:                             ...:::||       |.|.:         
Zfish   853 IQPNGLI-----------------------------THYRILVL-------YHDTL--------- 872

  Fly   643 CQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKT--SMISIPSASPAHT-GRDTCIAS 704
              :|  |..::            |.:.:.|..|..|..:.|  |:.::.|.....| |||.....
Zfish   873 --VQ--DITLR------------GQNLISPLRRNARSLDFTTESVFTLTSHETFSTLGRDFTNTD 921

  Fly   705 NKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK-- 767
            .:|.:.......|.:.||.|:....|:     :||.|:.:.|...:...|....|  |||..:  
Zfish   922 TEAPSALPLTPSTPHTPPPWLTVTHDR-----TDASVQTQTDAVTEDLTTEHPPV--TPGTDQSS 979

  Fly   768 -DLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQTAR 831
             ::..|...||...|......|:||             ..:||...:.::..|. ||        
Zfish   980 VNISPSHPHRVTRSTGSDSTQQETN-------------PPISAATTVGIEILPA-TE-------- 1022

  Fly   832 RGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTI-REEILSTGVMSSLSIKRTERSDSALF 895
                  :..:...::...::     .||.|..:.:::: .:.|:..|..:.:::|..|       
Zfish  1023 ------VSADLSSDQITHVV-----RRLSPFTEYKFSVSAKNIIGEGPSTEVTVKTNE------- 1069

  Fly   896 TCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRA 960
                                :||.....:...:.|..|:::||..|.:.|..:..|.: :.::..
Zfish  1070 --------------------QVPSSVQNVSYQNLSSTSIRVSWEPPLNPNGKITHYAV-YAQNLL 1113

  Fly   961 SWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTS--QSSEAVTIITAEEAPSGKPQNI 1023
            :..|:.::.   .||.|.:..|...::|.:|:.|..|:|.|  .:.:.:.::|.|:.|...|:.:
Zfish  1114 TNQELRQMT---DTTTAVLTGLDKYSSYKVRVAASTAVGESPLTNEDYIYVVTLEDVPDSPPRGL 1175

  Fly  1024 KVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLR 1088
            .:.....:|..::|.||.:.  ||.|..|.:.|    ||.:| ..|:|     ....:..|:.|:
Zfish  1176 TIVKTTSSTATLSWSPPEKP--NGIIRMYEISY----TNGTY-SNTVN-----STSASATLRYLK 1228

  Fly  1089 VYTQYSVVIQAFNKIGAG-PLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANG 1152
            .:|.|:|.::||..:|.| .:||..:..:.|..|..||.|.:..::.|.::.|.| |||| .|||
Zfish  1229 PHTHYNVTVRAFTLLGHGEQISETLQMLSGEDVPGSPPYDLSYESIGSSSVNVSW-SPPL-LANG 1291

  Fly  1153 VIKTYKVVYAPSDEWYDETKRHYKKTASSDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPI---- 1213
            ||..|.|      |:::.|:...:.|.....||..|:||.:|.:.|.|.|..|.|..:..|    
Zfish  1292 VILFYNV------EYWNATQSLNQTTHMPYIVLSNLRKYAHYRISVQAATQVGMGNHTSEILNIT 1350

  Fly  1214 -----HC-----QTEPDVP------------------EAP------------------------- 1225
                 .|     ||.|..|                  |||                         
Zfish  1351 TLEDGECLLCFSQTVPSSPPKFLIARKLSDTEVELSWEAPEEANSEILYYIVRVWNLSTEFVANV 1415

  Fly  1226 TDVKALV-----------------MGNAAILV------------------------------SWR 1243
            |:...:|                 :|:..:|:                              |||
Zfish  1416 TETSVVVSVDGPGQYNASVSSWTRLGDGGLLIYITFSTIESAPSDPPQDVVYTLLTISTVRLSWR 1480

  Fly  1244 PPAQPNGIITQYTVYSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSK 1308
            ||.:|||||..||:|......|   .|::||..:.....::|:..:.|..|:::||::|:|    
Zfish  1481 PPNEPNGIIQYYTIYYTDNNTE---YTERVPGSEHQLLLSDLQAGQDYSVWMSSSTSVGDG---- 1538

  Fly  1309 SIVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITWKIKGVEFSANDRMRVLPDGS 1373
                          ..|..:...|..||.:.|....|..|...|:.   .::::......||.| 
Zfish  1539 --------------GLFSPSLNFTTLEDGQSPHSLRGEAQLCTTFP---TDYTSKKIALKLPSG- 1585

  Fly  1374 LLIKSVNRQDAGDYSCHA-----------------ENSIAKDSITHKLIVLAPPQSPHVTLSATT 1421
                .|:...|..||..|                 :.|:.:..|||..|    .::.::|::.||
Zfish  1586 ----PVHNLSATIYSSTAVVISWDPPLEPNGRVYYQLSLQEAGITHPSI----NRTVNMTITKTT 1642

  Fly  1422 TDA--LTVKLKPHEGDTAPLHGYTLHYKPEFGEWETSEVSVDSQKHNIEGLLCGSRYQVYATGFN 1484
            ||.  |..||:.:       ..|.::..|                               ||   
Zfish  1643 TDTIYLFTKLRKY-------FPYIINVTP-------------------------------AT--- 1666

  Fly  1485 NIGAGEA---SDILNTRTKGQKPKLP-----EKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVES 1541
              .||.|   :.:|:.||....|..|     .|    .:||.|:.:.:....:....:..:.|  
Zfish  1667 --SAGSAVNHTTMLHLRTDEDVPSSPPLSGSNK----NLSSTSIQVSWFPPVEANGEIIEYAV-- 1723

  Fly  1542 KKRDQIEWNQISN-NVKPDNNYVVLDLEPATWYNLRITAHNSAGFTVAEYDFATLTVTGGTIAPL 1605
                .::....|| |...:.:.|:.:|.|.|.|||.|.|....| |......:..|...|.::|.
Zfish  1724 ----NLQGPSTSNKNYTSETHLVLSELTPFTPYNLSIAAVTRVG-TGPPVVLSLHTDEAGPMSPP 1783

  Fly  1606 DDGSGHGNVHTRIRLPAWMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVY 1670
            .:.:...:....:.| .|.|. .:.|.:|.|....::                         ::.
Zfish  1784 RNLTIFNHTANSVWL-QWEPS-PEPNGVVQLYGFRIL-------------------------ELN 1821

  Fly  1671 YDVVYNQTMGPGATLDKRRPDLRDELGYIAPPNR-----------------KLPPVPGSNYNTCD 1718
            .|....|.....:|        :.|||...|.|.                 .||.:..:|.:..|
Zfish  1822 TDSFRYQNSSDAST--------QAELGGFKPHNSYEISVCTFTRAGNGDQYSLPVLFTTNESVSD 1878

  Fly  1719 RIKRGRGGLRSNHSTWDPRRNPNLYEELKAPPVPMHGNHYGHAHGNAECHY---RHPGMEDEICP 1780
            .:    |.|..:...||     ::|.|.:.|.           |.|.|..|   |...:|||..|
Zfish  1879 AV----GNLSCSGLDWD-----SVYMEWELPD-----------HPNGEILYYLIRSGDLEDEAHP 1923

  Fly  1781 YATFH 1785
            ....|
Zfish  1924 VVLTH 1928

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653 27/129 (21%)
Ig 269..340 CDD:143165 26/124 (21%)
IG_like 353..425 CDD:214653 16/71 (23%)
IGc2 361..413 CDD:197706 11/51 (22%)
I-set 433..527 CDD:254352 18/103 (17%)
IGc2 446..517 CDD:197706 12/70 (17%)
I-set 533..618 CDD:254352 14/104 (13%)
IGc2 544..607 CDD:197706 9/82 (11%)
Ig 641..714 CDD:143165 14/75 (19%)
IGc2 735..804 CDD:197706 16/71 (23%)
I-set 819..914 CDD:254352 10/95 (11%)
Ig 833..921 CDD:299845 9/88 (10%)
FN3 918..1011 CDD:238020 19/94 (20%)
FN3 1018..1116 CDD:238020 26/98 (27%)
FN3 1124..1217 CDD:238020 33/106 (31%)
FN3 1222..1312 CDD:238020 32/179 (18%)
Ig 1339..1406 CDD:299845 16/83 (19%)
FN3 1409..1499 CDD:238020 16/94 (17%)
FN3 1504..1584 CDD:238020 19/85 (22%)
Dscam_C 1890..2008 CDD:289151
ptprqXP_021323628.1 fn3 209..278 CDD:306538
FN3 301..363 CDD:328772
FN3 382..470 CDD:238020 2/9 (22%)
FN3 475..569 CDD:238020 24/101 (24%)
FN3 723..808 CDD:238020 23/115 (20%)
FN3 829..>864 CDD:238020 5/63 (8%)
FN3 <1033..1067 CDD:238020 5/38 (13%)
FN3 1072..1161 CDD:238020 19/92 (21%)
fn3 1170..1241 CDD:306538 21/82 (26%)
fn3 1264..1340 CDD:306538 30/83 (36%)
fn3 1368..>1410 CDD:306538 4/41 (10%)
FN3 1460..1549 CDD:238020 25/109 (23%)
FN3 1585..1670 CDD:214495 24/136 (18%)
FN3 1697..1768 CDD:238020 19/81 (23%)
FN3 1781..1872 CDD:238020 17/125 (14%)
fn3 1878..1958 CDD:306538 18/71 (25%)
FN3 2029..2133 CDD:238020
FN3 2141..2235 CDD:238020
FN3 2242..2338 CDD:238020
UP_III_II 2354..>2491 CDD:297589
PTPc 2599..2855 CDD:214550
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 60 1.000 Domainoid score I10555
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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