DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and Dscam2

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster


Alignment Length:2084 Identity:693/2084 - (33%)
Similarity:1088/2084 - (52%) Gaps:208/2084 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 WLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 74
            |:.....|.|:........:.|.:|..:||.|:.||..|::||||:|..::|.|||:|.|.:.|:
  Fly     2 WISSRFFVILLLLNLDNTCSEPFEAHLRGPGFVMEPPGRVEFSNSSGGWLDCSASGSPQPTVDWV 66

  Fly    75 RSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVSQ 139
            .:||:||.::.|:|::..:|.||..||.|..|.|:||..:|.|:|.|..|.|:||||.|||||:|
  Fly    67 HADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYHQDVHNTIYRCIASNSVGRIVSRDVQVRAVVAQ 131

  Fly   140 HYEEDIHKAFVIRGNSAILKCDIPSFVADFVNVISWHSDEKENFYPGTEYDGKYLVLPSGELHIR 204
            .|:.|:......||.:|||:|.:|:||.:.|.|:||..:.....||..:.|||:.:||:|||.|.
  Fly   132 AYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFHLLPTGELLIH 196

  Fly   205 EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVSPQLSGNGNQEHITLTRVPKMGSV 269
            .:...|..:|::||:.||||.:..:|:.. ||.|....|.:||.:     .||....:|.:....
  Fly   197 NLQESDESQSFRCRSMHRLTRQVVVSSPT-RLRINSHRGIISPSV-----VEHTAHVQVSQDEGA 255

  Fly   270 TLMCPAQAYPVPFFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 334
            .|:|.||..|.|.:.|  |.........|:...||:.:...|.|:....||||.|.|...| |||
  Fly   256 VLLCVAQGCPSPEYSW--FTHNGAGPLPVLSGPRVRLLGPILAIEAVTGEDSGVYKCTAGN-VGG 317

  Fly   335 E-SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT--GNPI--KTVSWMKDGKAI---GHSE 391
            | |.|..|||..|:..:|.|...:|..|..|.|.|..|  |:|:  :.:.|.|||:.:   |..|
  Fly   318 EASAELRLTVATPIQVEISPNVLSVHMGGTAEFRCLVTSNGSPVGMQNILWYKDGRQLPSSGRVE 382

  Fly   392 PVLRIESVKKEDKGMYQCFVRNDQ-ESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV 455
            ..|.:..|.:|::|||||.||..: ::.:|:|||:||..  |||:..:|.|:|::|||:|.|||.
  Fly   383 DTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQLGDA--PPVLLYSFIEQTLQPGPAVSLKCS 445

  Fly   456 AGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 520
            |.|||||:|||.|||..:.:|.|:.:|||:||:|||:|::||:.|...|||.|.|||:::.|..:
  Fly   446 AAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEYACIAENRAGRVQ 510

  Fly   521 HSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLI 585
            |:|:||:|||||||.:.|...|:||||.:.||||||||:.|.|||..|.||.:.:|:|.|:|:|.
  Fly   511 HAARLNIYGLPYIRLIPKVTAVSGETLNLKCPVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLT 575

  Fly   586 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDL-INMGDSIDLFCQIQKGD 649
            |..|::|||...|||.|:|::|:|||.|.||.|:|.|::.||....| :||||...|.|.:.|||
  Fly   576 ISPVQKNSDSGVYTCWARNKQGHSARRSGEVTVIVPPKLSPFQTNILQLNMGDRASLTCSVVKGD 640

  Fly   650 RPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSV 714
            .|:.::|   |..| ...|..| .|...::.:..|::.|.:....|||..:|:..|.|.....|.
  Fly   641 LPLTINW---RKDG-RPIDPTQ-HMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQ 700

  Fly   715 DLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR-VE 778
            .|.||||||||:||.|....:.....:.|:|.|.|.|.:.||||.|...|||:::::....: :.
  Fly   701 ALLVNVPPRWIVEPVDANVERNRHIMLHCQAQGVPTPSIVWKKATGSKSGEYEEVRERPFTKLLG 765

  Fly   779 EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAK 843
            .|:|.:.::::..||:|||:|.||||:|:..||.:.|.:.|.|:...|:...::|:.|:|||...
  Fly   766 NGSLLLQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVS 830

  Fly   844 GEKPIGILWNMNNMR-LDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDD 907
            |:|||.|:|..:... |:|..:.:.::::|....||.:.|.|:..:.:||..:.|.|:|.:|:|.
  Fly   831 GDKPINIVWMRSGKNTLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQ 895

  Fly   908 ASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRAS---------WS 963
            ..:.:.|||.|..|..|:....|.|||.:.|.....|...:.:||:||:.:..|         |.
  Fly   896 QLVQLQVQEPPLPPSVLEAAMISSRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQ 960

  Fly   964 EIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPV 1028
            :|: |..|.| ..|.::.|.|||.|..|::||.:.|.|..|:.:.:.|..:.|:|.|.::...|:
  Fly   961 QIE-VKDPPH-FNAMIENLKPATRYAFRVIAEGSAGRSAPSQELIVRTEPQRPAGPPLSLSARPL 1023

  Fly  1029 NQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNT-NSSYVFETINFITEEGKEHNLELQNLRVYTQ 1092
            :.|.:.::|..|.....:|:|.||.||||||:: |::|.|.:::. ..:|....|.|..|..:.:
  Fly  1024 SSTELLISWVAPLPELRHGDIQGYNVGYKLSSSGNTAYNFTSVSG-DGDGGNGELLLSGLAKFAR 1087

  Fly  1093 YSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTY 1157
            |:||:||||::|.|||||.....|.|..||:||.|..|..|:||:::|.|..||:...||:::.|
  Fly  1088 YTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYHTNGLLQGY 1152

  Fly  1158 KVVYAP--SDEWYDETKRHYKKTASSDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPD 1220
            |:::.|  .|....:.:...:||.:...||.||:|||||::||||.|..||||.|.|:.|.:|.|
  Fly  1153 KLIFEPIIDDIQPSKDEVESRKTTALTMVLTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCHSEED 1217

  Fly  1221 VPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAETETKTQK--VPHYQMSFEAT 1283
            |||||.|:|.:...:.::.:||.||.:|||:||:|::|::......|...:|  :|..|..:||.
  Fly  1218 VPEAPADIKVVSSSSQSLYISWLPPNEPNGVITKYSLYTRVVNGREELNNEKRSLPSQQAYYEAK 1282

  Fly  1284 ELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQ 1348
            .|..:..|:|||||||.:|||:.|:....:.::::||:|.||.......::....:||.|||.|:
  Fly  1283 GLHPHMEYQFWVTASTRVGEGKSSRVSSQITTNRIPARIISFGGPVVRPWRSTVTLPCTAVGKPK 1347

  Fly  1349 PEITWKIKGVEFSANDRMR--------VLPDGSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLI 1405
            .|  |      |.::..:|        :|..|.|:|.|:...|.|:|||..:|.|..|.:||.||
  Fly  1348 RE--W------FKSDVALRQGGLHNSQLLDSGDLIISSLQLADGGNYSCQVDNGIGTDRLTHTLI 1404

  Fly  1406 VLAPPQSPHVTLSATTTDALTVKLKPHEGDTAPLHGYTLHYKPEFGEWETSEVSVDSQKHNIEGL 1470
            |..||.:|.:.:::.|:.::.:..|......||:.||||.|:...|..:..::|..:..|.::||
  Fly  1405 VQVPPTAPVLYVTSATSSSILMHWKCGFTGNAPITGYTLFYRRANGNTDEMQLSRHASSHELKGL 1469

  Fly  1471 LCGSRYQVYATGFNNIGAGEASDILNTRTKGQKPKLPEKPRFIEVSSNSVSLHFKAWKDGGCPMS 1535
            :|||.||::.:..|.:|....|.||:.||:||.|..|.....:..:|.|:.:...:|.|.|||:.
  Fly  1470 MCGSTYQIHLSAQNKVGTSPTSTILHVRTQGQSPGHPASTALLAPNSTSLLVRLHSWPDNGCPLL 1534

  Fly  1536 HFVVESK---KRDQIEWNQISNNVKPDNNYVVLDLEPATWYNLRITAHNSAGFTVAEYDFATLTV 1597
            :||::.:   .....||..:||.:||....|:.:|:|:|.|.||:.|||.||.:.||::|.|||.
  Fly  1535 YFVLQYRAVTDDPDAEWVLVSNALKPQRRIVINNLQPSTLYQLRMEAHNVAGISQAEFNFVTLTK 1599

  Fly  1598 TGGTIAPLDDGSGHGNVHTRIRLPAWMPEWLDLNFMVPLIATV--VVVAVGICVVCVALSRRRAD 1660
            .|....|.....|.....|.|        :.::|.::|.||.|  :...:.:.:||         
  Fly  1600 DGDPPPPEIMHRGRSGQTTVI--------FANINLLIPTIAAVSGMFCTIIMIIVC--------- 1647

  Fly  1661 DMRGGQKDVYYDVVYNQTMGPGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGRG 1725
                     |..::.|                       |||..:...:...:.           
  Fly  1648 ---------YRHMLKN-----------------------APPLAEQSQIQKESL----------- 1669

  Fly  1726 GLRSNHSTWDPRRNPNLYEELKAPPVPMHGNHYGHAHGNAECHYRHPGMEDEICPYATFHLLGFR 1790
               .|.:..:..:....|..:.  .|.|..|.            :.|...::|.|||||.|    
  Fly  1670 ---ENRANSEAAQRERYYATIH--KVSMQNND------------KIPETSEDISPYATFQL---- 1713

  Fly  1791 EEMDPTKAMNFQTFPHQNGHAGPVPGHAGTMLPPGHPGHVHSRS----GSQSMPRANRYQRKNSQ 1851
                 ::|....:.||   |.||    |.|:|   |....|.|:    .|...|.|::.:|::|:
  Fly  1714 -----SEAGGNMSQPH---HGGP----ANTLL---HSFMYHERALAEGCSSPPPAASKNRRRHSR 1763

  Fly  1852 GGQSSIYTPAPEYDDPANCAEEDQYRRYTRVNSQGGSLYSGP--------GPEYDDPANCAPEED 1908
            ..:       ||.::    :|.|| .:.|...::..:.:.|.        |.:....::.:|..:
  Fly  1764 KTE-------PESEE----SESDQ-DQLTSSRTESSNQHEGKIKHSIIYHGAQSSTSSDLSPMSE 1816

  Fly  1909 QYG------SQYGGPYGQPYD--------HYGSRGSMGRRSIGSARNPGNGSPEPPPPPPRNHDM 1959
            |..      |:|   :.|.|.        |:.|.......:..:.....|.:..|......|..:
  Fly  1817 QKSLPRRGRSRY---HHQQYQFSTNTTPRHHNSNKMNNNTTSNTNTTATNTTATPSTSSNSNKIL 1878

  Fly  1960 SNSSFNDSKESNEISEAECDRDHGPRGNYGAVKRSPQPKDQRTTEEMRKLIERNETGPKQLQLQQ 2024
            |....|....|:.....:..:.|.|     .:.:||....|:..:..::.::.:.|...|.....
  Fly  1879 SPRGGNLKSISSTFKSQDSIQCHIP-----TLVKSPSISTQQQKQFHKQQLQNSSTNNSQHSSSN 1938

  Fly  2025 ANGA 2028
            .|.:
  Fly  1939 PNSS 1942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 41/91 (45%)
IG 57..133 CDD:214652 33/75 (44%)
IG_like 267..343 CDD:214653 27/76 (36%)
Ig 269..340 CDD:143165 26/71 (37%)
IG_like 353..425 CDD:214653 28/79 (35%)
IGc2 361..413 CDD:197706 22/58 (38%)
I-set 433..527 CDD:254352 49/93 (53%)
IGc2 446..517 CDD:197706 40/70 (57%)
I-set 533..618 CDD:254352 45/84 (54%)
IGc2 544..607 CDD:197706 34/62 (55%)
Ig 641..714 CDD:143165 20/72 (28%)
IGc2 735..804 CDD:197706 23/69 (33%)
I-set 819..914 CDD:254352 28/95 (29%)
Ig 833..921 CDD:299845 29/88 (33%)
FN3 918..1011 CDD:238020 31/101 (31%)
FN3 1018..1116 CDD:238020 36/98 (37%)
FN3 1124..1217 CDD:238020 40/94 (43%)
FN3 1222..1312 CDD:238020 36/91 (40%)
Ig 1339..1406 CDD:299845 26/74 (35%)
FN3 1409..1499 CDD:238020 27/89 (30%)
FN3 1504..1584 CDD:238020 27/82 (33%)
Dscam_C 1890..2008 CDD:289151 21/139 (15%)
Dscam2NP_001261500.1 Ig 51..127 CDD:299845 34/75 (45%)
Ig 138..>203 CDD:299845 24/64 (38%)
I-set 238..327 CDD:254352 31/96 (32%)
Ig 247..327 CDD:299845 28/82 (34%)
I-set 332..418 CDD:254352 30/85 (35%)
IGc2 344..407 CDD:197706 23/62 (37%)
IG_like 432..517 CDD:214653 45/84 (54%)
IGc2 436..507 CDD:197706 40/70 (57%)
I-set 521..610 CDD:254352 48/88 (55%)
IGc2 533..597 CDD:197706 34/63 (54%)
Ig 630..699 CDD:143165 20/73 (27%)
IG_like 714..802 CDD:214653 30/87 (34%)
Ig 725..802 CDD:299845 28/76 (37%)
Ig 823..894 CDD:143165 23/70 (33%)
FN3 906..1006 CDD:238020 31/101 (31%)
FN3 1013..1111 CDD:238020 36/98 (37%)
FN3 1119..1209 CDD:238020 38/89 (43%)
FN3 1219..1313 CDD:238020 36/93 (39%)
Ig 1336..1402 CDD:143165 24/73 (33%)
FN3 1409..1498 CDD:238020 26/88 (30%)
FN3 1515..1588 CDD:238020 27/72 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4915
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 917 1.000 Inparanoid score I353
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6394
orthoMCL 1 0.900 - - OOG6_101656
Panther 1 1.100 - - P PTHR10075
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1391
98.870

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