DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and dscamb

DIOPT Version :10

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio


Alignment Length:2123 Identity:614/2123 - (28%)
Similarity:951/2123 - (44%) Gaps:315/2123 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 105
            |:......:.||::|||.:.|.|:..|...:.|..:.|..:.||||:|.:..:|.|....|....
Zfish    26 FVNASLQEVVFSSTTGALVPCPAAAVPPATLRWYLATGEEIYDVPGIRHVHPNGTLQIYGFLPSS 90

  Fly   106 YRQEVHAQVYACLARNQFGSIISRDVHVRAVVSQHYEEDIHKAFVIRGNSAILKCDIPSFVADFV 170
            :...::...|.|.|.|..|.|.|:|:|::||..:.|...:....|:|||:|:.||.||:.|.::|
Zfish    91 FSNLINDNTYYCTAENPSGKIRSQDLHIKAVFREPYTVRVADQRVMRGNTAVFKCIIPASVEEYV 155

  Fly   171 NVISWHSDEKENFYPGTEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
            :|:||..| ..:...|:    :||:..:|.|:|.:|..||....|:|.|:||.|||||.| ...|
Zfish   156 SVVSWEKD-TVSLVSGS----RYLITSTGALYILDVQSEDAVNIYRCTTRHRYTGETRQS-NSAR 214

  Fly   236 LVITEPVGSVSPQLSGNGNQEHITLTRVPKMGSVTLMCPAQAYPVPFFRWYKF---IEGTTRKQA 297
            |:::|||.|....|.|...:|.:...|      |.|.|.|..:|.|.:||.:.   :|..:|.. 
Zfish   215 LLLSEPVDSAPVILDGFERKEVMVGHR------VELPCKASGHPPPRYRWLRDNSPLESDSRYH- 272

  Fly   298 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 362
                   :.||| |:|:.....|:|.|:|.|.||.|...|...|.|..||.|.:.|.......|.
Zfish   273 -------QSVSG-LLIEATRPSDAGSYVCEVWNSFGNAKVVGRLVVKQPLKAVVSPRKVRGSVGS 329

  Fly   363 PAVFTCQYTGNPIKTVSWMKDGKAI---------GHSEPVLRIESVKKEDKGMYQCFVRNDQESA 418
            .....|..||:....::|.::.:.|         |.:...|.:|.:.|.|.|.||||.||.:.|.
Zfish   330 QVSLFCSVTGSDEFDITWYRNAEKIYQGINVRITGINNENLVMEGMAKSDGGAYQCFARNGKMST 394

  Fly   419 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQ 483
            :...::.|  ....|.|..||.|:.:.|...:.|.|...|.|.|.::|.||...:..:..:::.:
Zfish   395 QDLVQVVL--EDGTPKILSAFSEKVVSPNEPISLVCHVKGTPLPTVTWTLDDDPVIKDSNHRMDR 457

  Fly   484 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLI 548
            .:|..|.|:||||::....:|||:|:|...:..|...:.|::||.|...||.|:....:||....
Zfish   458 IITTEGHVLSYLNVSHTQVSDGGVYRCTCNNSAGSVSYQARINVRGPASIRPMKNVTAIAGRDTY 522

  Fly   549 VTCPVAGYPIDSIVWERDNRALPINRKQKVFP-NGTLIIENVERNSDQATYTCVAKNQEGYSARG 612
            :.|.:.|||..||.|.:|:..||.|.:|:.|. ||||.:.||: |||:..|||............
Zfish   523 IHCRIIGYPYYSIKWYKDSNLLPFNHRQRAFENNGTLKLSNVQ-NSDEGEYTCYVLVDPEKQIHR 586

  Fly   613 SLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHW-----SFERSAGDYGFDQVQP 672
            |:.|.|.| |.::..:.....::|..:.:.|.:..||.|:.:.|     ....|.| ...|.:  
Zfish   587 SVHVTVKV-PPLIQHSDSQSASIGQRVFIPCVVISGDLPMSITWHKDGRPINASLG-VTIDNI-- 647

  Fly   673 QMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGS 737
                    :.||.:.|.:.|..|.|..||||.|:|....:|:.|.|.|||.:.::|.|:....|.
Zfish   648 --------DFTSSLRISNLSEIHNGSYTCIARNEAAAVEHSIQLIVKVPPHFEVQPKDQDGIYGK 704

  Fly   738 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV---EEGTLHVDNIQKTNEGYYLCEA 799
            ...:.|.|.|.|.|.:.|..:.|....:::.:..:...||   |.|:|.:.::.:.:.|:|||:.
Zfish   705 SVTLNCSAKGNPIPTIVWNHSKGAGVPQFQPIALNSGSRVQLLENGSLLIKHVLEEDAGFYLCKV 769

  Fly   800 INGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKND 864
            .|.:|:.:|..:.::|:.|...|.......|.:|....:.|.|.|||||.:.|...:..::| :.
Zfish   770 SNDVGADISKSMYLTVKIPAMITSYPNTTRAEQGHMTEMSCTAHGEKPIKVRWEKESHIINP-DM 833

  Fly   865 NRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDK 929
            :||.:..:.:...|:|:|.|..|.|.||..|:|:|.|::|.|...|.:|||:.|:.| .:::.:.
Zfish   834 SRYVVTVKEVGDEVISTLQILHTVREDSGFFSCIAINSYGEDKGIIQLIVQDRPDPP-EVEIREV 897

  Fly   930 SGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASW--SEIDRVIVPGHTTEAQVQKLSPATTYNIRI 992
            ..|::.|.|...:|||||:..|.|.:|...|||  |::.:.:.| ...:|.:.:|.||:|||||:
Zfish   898 KDRTIALRWTMGFDGNSPITGYDINYKNKSASWASSQMTKDVSP-QLNQATIIELHPASTYNIRM 961

  Fly   993 VAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYK 1057
            .|:|.||.|:.|..:||.|.|..|.|.||::::|.::...::||||||.:...||.|..|.|.|:
Zfish   962 FAKNQIGESRPSNELTITTDEAPPDGAPQDVQLEAISSQGIKVTWKPPHKHLQNGLIRSYQVCYR 1026

  Fly  1058 LSNTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPS 1122
            ...|..|..:.||| :...|....|.|.||:.||||.|.:||.|:.|.||.|||....|.|..||
Zfish  1027 EFGTGGSPQYNTIN-VDTTGDIETLTLDNLKKYTQYEVRVQAANRAGMGPTSEEITITTLEDVPS 1090

  Fly  1123 QPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVY---APSDEWYDETKRHYKKTASSDTV 1184
            :||.:...|..|.:||.:.|.:.|.|:.||::..|:|::   .|..| ..|.:.  ..|......
Zfish  1091 RPPENVVTTATTPETISLSWSALPKEALNGMLLGYRVIFWANLPDGE-LGEIRN--ITTTKPSLE 1152

  Fly  1185 LHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPN 1249
            |..|:|||||::||||.|..||||||..|:.:|:.|||..|..|||....::.:.|||.||.:.|
Zfish  1153 LERLEKYTNYSIQVLAFTRAGDGVRSEQIYTRTKEDVPGPPAGVKAAASTSSVVFVSWLPPHKLN 1217

  Fly  1250 GIITQYTVYSKAEGAETETKTQKVPHYQMSFEA---------TELEKNKPYEFWVTASTTIGEGQ 1305
            |||.:|.|:.          :...|.....|||         |.|.:|..|..||.|.|..|.|.
Zfish  1218 GIIRKYIVFC----------SNPYPTVISEFEAAPDVYFRRLTNLNQNWQYSIWVVAVTAAGRGN 1272

  Fly  1306 QSKSIVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITWKIKG-----VEFSANDR 1365
            .|:.|...|..:.||:|.:|..|.|..:..|..:||.|||.|.|.|.| :||     ...|.:.|
Zfish  1273 TSEIITVEPQAKAPARILTFSGTVTTPWMRDIVLPCKAVGDPPPTIKW-LKGNNGTPAPVSIDGR 1336

  Fly  1366 MRVLPDGSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLK 1430
            .....:||.:|::|..:|:|.|.|.|.|:...|.|...|.|..||..|.:|::.|||.::|:...
Zfish  1337 RSAHNNGSFVIRTVKAEDSGYYRCVASNNWGSDEIMLNLQVQVPPDQPRLTVTKTTTTSITLFWI 1401

  Fly  1431 PHEGDTAPLHGYTLHYKPEFG-EWETSEVSVDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDI 1494
            |.:...:.:.||.|.|..:.. ||.:..:|...:.:.:|.|.||:.|:...|..|.:|.|..|:|
Zfish  1402 PGDNGGSSIRGYILQYSEDNSEEWGSYSISPSERSYRLENLKCGTWYKFTLTAQNAVGPGRISEI 1466

  Fly  1495 LNTRTKGQKPKL-PEKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVKP 1558
            :..:|.|::|:. .:...|..::|..|.|:...|.:||||:..|.:|.:..|..:|..    ||.
Zfish  1467 IEAKTHGKEPQFAKDHELFSSINSTRVELNLIGWNNGGCPIDSFTLEYRPVDTTKWTM----VKR 1527

  Fly  1559 DN---NYVVLDLEPATWYNLRITAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRL 1620
            |:   ::::.||:.||||.|::...||||.......||||.:.|.|||||               
Zfish  1528 DSLTKSHILYDLQEATWYELQMRVGNSAGTAEKRVLFATLNMDGSTIAPL--------------- 1577

  Fly  1621 PAWMPEWLDL-------NFMVPLIATVVVVAVGIC---VVCVALSRRRADDMRGGQKD------- 1668
                |:.:|.       |..:.::.|::.:.|.||   :|.:.|.|||.:......:|       
Zfish  1578 ----PKSVDPSQENRQGNEGLKMMVTIICILVAICMVFIVLLVLRRRRREQRLKRLRDAKSLAEM 1638

  Fly  1669 --------------------VYYDV---------------------------------------- 1673
                                ::.|:                                        
Zfish  1639 LMSKNARTPDTVNKQQQTLRMHIDIPRAQLLIEERDTMETIDDRSTVLLTDNDFGETSKQKSSTV 1703

  Fly  1674 ---VYNQTMG-------------PGATLDKRR-----PDLRDELGYIAPPNRKLPPVPGSNYNTC 1717
               |:.|::.             ||.....||     |..|.........||..|||......|.
Zfish  1704 THTVHYQSLSQATGPLVDVSDARPGTNPTARRTAKAGPATRSRYASQWTLNRPHPPVSSHTLTTD 1768

  Fly  1718 DRI--KRGRGGL----------------RSNHSTWDPRRNPNLYEELKAPPVPMHGNHYGHAHGN 1764
            .|:  .|..|.:                |:..|........:.||||...               
Zfish  1769 WRLPTPRATGSVDKESDSYSVSPSQDTDRARSSMVSTESASSTYEELARA--------------- 1818

  Fly  1765 AECHYRHPGMEDEICPYATFHLLGFREEMDPTKAMNFQTFPHQNGHAGPVPGHAG----TMLPPG 1825
                |.|..||::: .:|.|.:.........::.|...|..:.:......|..:|    |..|| 
Zfish  1819 ----YEHAKMEEQL-RHAKFTITECFISDTSSEQMTAGTNDYTDSLTSSTPSESGICRFTASPP- 1877

  Fly  1826 HPGHVHSRSGSQSMPRANR----------YQRKN---SQGGQSSIYTPAPEYDDPANCAEEDQYR 1877
            .|... ||..:.::|:|:|          |.|.:   ::|..||      ..:.......:.|..
Zfish  1878 KPQDA-SRVMNMAVPKAHRPAGELVHLPPYLRMDFLLNRGAASS------GREATGQTCMDPQKS 1935

  Fly  1878 RYTRVNSQGGSLYSGPGPEYDDPANCAPEEDQYGSQYGGPYGQPYDHYGSRGSMGRRSIGSARNP 1942
            |.|:                 .||..||.          |...|.....|.|...|.:: ....|
Zfish  1936 RITK-----------------RPALLAPT----------PSETPSSALSSSGPPSREAV-QQWQP 1972

  Fly  1943 GNGSPEPPPPPPRNHDMSNSS-FNDSKESNEISEAECDRDHGP 1984
            |..|..|...|   .|::.:: .:.|:||...|.....:.:.|
Zfish  1973 GTASTLPQREP---GDLAQAAKLSSSQESLLDSRGHLKQSNNP 2012

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 IgI_1_Dscam 38..136 CDD:409547 28/94 (30%)