DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and Sdk2

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_006247755.1 Gene:Sdk2 / 360652 RGDID:1310397 Length:2175 Species:Rattus norvegicus


Alignment Length:2368 Identity:501/2368 - (21%)
Similarity:838/2368 - (35%) Gaps:583/2368 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MPNE-RLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGN 66
            ||:. ||....|.|...:.:.|:|         |...|.|..||.............:.|.|.|:
  Rat     1 MPSMWRLPIWTLLALHRIHSAGAQ---------DDVPPYFKTEPVRTQVHLEGNRLVLTCMAEGS 56

  Fly    67 PMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYR------QEVHAQVYACLARNQFGS 125
            ...|..|:.::          |:::.        |..| ||      ...||..|.|:.||:.|:
  Rat    57 WPLEFKWLHNN----------RELTR--------FSLE-YRYMITSLDRTHAGFYRCIVRNRMGA 102

  Fly   126 IISRDVHVRAVVSQHYEEDIHKAFVIRGNSAILKCD-IPSFVADFVNVISWHSDEKENFYPGTEY 189
            ::.|...|:......:||......|..|.:|::|.. |.||...   .::|..|.::        
  Rat   103 LLQRQTEVQVAYMGSFEEGEKHQSVSHGEAAVIKAPRISSFPRP---QVTWFRDGRK-------- 156

  Fly   190 DGKYLVLPSGELHI---------REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSV 245
                 :.||..:.|         ..|.|:.|  .|..:..:...|:.:.|         :|:...
  Rat   157 -----IPPSSRIAITLENTLVILSTVAPDAG--RYYVQAVNDKNGDNKTS---------QPITLA 205

  Fly   246 SPQLSGNGNQEHITLTRVPKMGS-------VTLMCPAQAYPVPFFR--WYKFIEGTTRKQAVVLN 301
            ...:.|..:....|:...||..|       ||:.|.|.|.|:....  |        :|...:|:
  Rat   206 VENVGGPADPIAPTIIIPPKNTSVVAGTSEVTMECVANARPLIKLHIVW--------KKDGALLS 262

  Fly   302 DRVKQVSGTLIIKDAVVEDSGKYLC---VVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGR 362
            :.:...:..|.|.:.:|.|:|.|.|   :.::||...:....|:|..|.....:|... |.:..:
  Rat   263 NGISDYNRRLTITNPMVSDAGYYECEAMLRSSSVAPVTRGAYLSVLEPPQFVREPERHITAEMEK 327

  Fly   363 PAVFTCQYTGNPIKTVSWMKDGKAI---------GHSEPVLRIESVKKEDKGMYQCFVRNDQESA 418
            .....|:..|.|..:::|.||...:         ..|:..|:|..:..:|.||.|||..|....|
  Rat   328 VVDIPCRAKGVPPPSITWYKDAALVEVGKLTRFKQRSDGGLQISGLLPDDTGMVQCFAHNAAGEA 392

  Fly   419 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQ 483
            :.|..|.:..  ..|.|.:...:.|:..|.||.|.|...|.|.|.|:|: .|::|..:...|:.:
  Rat   393 QTSTYLAVTS--IAPNITRGPLDSTVIDGMSVVLACETSGAPRPAITWQ-KGERILASGSVQLPR 454

  Fly   484 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI-RQMEKKAIVAGETL 547
            :..:..   ..|.|:..|.:|.|.|.|:|.:..||.|.||.|.|:....| :..:.::::.|...
  Rat   455 FTLLES---GSLLISPTHISDAGTYTCLATNSRGVDEASADLVVWARTRITKPPQDQSVIKGTQA 516

  Fly   548 IVTCPVAGYPIDSI--VWERDNRALPI--NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 608
            .:.|.|...|..::  |||:|...|.:  |.:.::..||:|.|... .:.|..||||...:..|.
  Rat   517 SMVCGVTHDPRVTVRYVWEKDGATLAVETNPRIRLDRNGSLHISQT-WSGDIGTYTCRVLSAGGN 580

  Fly   609 SARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQ 673
            .:|.: .::|..||.........|..|            ..|.|.:.|:       ..||...|.
  Rat   581 DSRNA-HLRVRQLPHAPEHPVATLSTM------------ERRAINLTWA-------KPFDGNSPL 625

  Fly   674 MR-TNRISEKTSMISIPSAS--------------PAHTGRDTCIASNKAGTTTYSVDL-TVNVPP 722
            || ...:||..:..:|..||              ||.:.:....|.|..|...:|.|. .|::|.
  Rat   626 MRYILEMSENNAPWTILLASVDPEATSVMVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 690

  Fly   723 RWILEPTDKAFAQGS---------DAKVECKADGFPKPQVTWKKAVGDTPG-EYKDLKKSD--NI 775
            .....|.....|.|.         ....|...:|..|..:......|...| ::|::..:|  |:
  Rat   691 EPPTAPPQNVIASGRTNQSIMIQWQPPPESHQNGILKGYIIRYCLAGLPVGYQFKNITDADVNNL 755

  Fly   776 RVEE---------------------------------------GTLHVDNIQKTNEGYY----LC 797
            .:|:                                       |.:|.:....|...:.    ..
  Rat   756 LLEDLIIWTNYEIEVAAYNSAGLGVYSSKVTEWTLQGVPTVPPGNVHAEATNSTAIRFTWNAPSP 820

  Fly   798 EAINGIGSGLSAVI--------MISVQAPPEFTEK--------LRNQT--------------ARR 832
            :.||||..|...:.        :..|.|.|.|.:.        |:..|              ..|
  Rat   821 QFINGINQGYKLIAWEPTQEEEVTMVTARPNFQDSIHVGFVSGLKKFTEYFTSVLCFTTPGDGPR 885

  Fly   833 GEPAVLQCEAKGEKPIG-------------ILWN--------MNNMRLDPKNDNRYTIREEILST 876
            ..|.:::.......|:|             :.|.        :...|:..:..||...|    .|
  Rat   886 SSPQLVRTHEDVPGPVGHLSFNDILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTR----VT 946

  Fly   877 GVMSSLSIKRTERSDSALFT----CVATNAFGSDDASINMIVQEV-PEMPYA---LKVLDKSGRS 933
            ..:.:::::......:||.|    ..|..:.|....|.:.|...| ||:|.|   |.:.:...||
  Rat   947 HYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPPELPGAPTNLGISNIGPRS 1011

  Fly   934 VQLSWAQPYDGNSPLDRYIIEFK----RSRASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVA 994
            |.|.:...|||.:.:.|:::|.:    .....|..|.::.........:|..|:|.|.|:.|:..
  Rat  1012 VTLQFRPGYDGKTSISRWVVEAQVGMIGEGEEWLLIYQLSNEPDARSMEVPDLNPFTYYSFRMRQ 1076

  Fly   995 ENAIGTSQSSE-AVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNG--EILGYYVGY 1056
            .|.:|||..|: :..|.|.:..|...|.|:.:...::|::.:.|.|.|..|:||  |.:||.:.|
  Rat  1077 VNIVGTSPPSQPSRKIQTLQAPPDMAPANVTLRTASETSLWLRWMPLPEMEYNGNPESVGYKIKY 1141

  Fly  1057 KLSNTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTP 1121
            ..|:.:.    :|::...::..|....:::|..:|:|.|.:||||.||:||.|:.....|.|..|
  Rat  1142 SRSDGHG----KTLSHTVQDRVEREYTIEDLEEWTEYRVQVQAFNAIGSGPWSQAVVGRTRESVP 1202

  Fly  1122 SQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRHY--KKTASSDTV 1184
            |..|::.:....||.::.|.|...|....||::..|||.|...|.  |...|.:  :..:|....
  Rat  1203 SSGPTNVSALATTSSSMLVRWSEIPEADRNGLVLGYKVRYKEKDS--DSQARFWLVEGNSSRSAQ 1265

  Fly  1185 LHGLKKYTNYTMQVLATTAGGDGVRS-VPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQP 1248
            |.||.||..|.:||||.|..|||..| .||..:|..|||..|..:....:...::.:.|:|||.|
  Rat  1266 LTGLGKYVLYEVQVLAFTRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPATP 1330

  Fly  1249 NGIITQYTVYSKAEGAETETKTQKV--PHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIV 1311
            ||||..|.:..:.......|.|.:|  |..: .:.||.|:....|.|.:||.|..|.|:.::::|
  Rat  1331 NGIILAYQITHRLNATTANTATVEVLAPSAR-QYMATGLKPESVYLFRITAQTRKGWGEAAEALV 1394

  Fly  1312 AMPS----DQVPAKIASFDDTFTATFKEDAKMPCLAVG--------AP----------QPEITWK 1354
            ....    .|.|:|        ....:||.|...:.:.        :|          .|...|.
  Rat  1395 VTTEKRDRPQPPSK--------PVVQQEDVKARSVLLSWEPGSDGLSPVRYYTIQTRELPSGRWA 1451

  Fly  1355 IKGVEFSAN------DRMRVLPDGSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSP 1413
            :.....|.|      ||::........:|:.|  |.||    :|.|...:|:|  .:..||.::|
  Rat  1452 LHSASVSHNASAFTVDRLKPFTSYKFRVKATN--DIGD----SEFSEESESLT--TLQAAPDEAP 1508

  Fly  1414 HVTLSAT--TTDALTVKLKPHEGD--TAPLHGYTLHYKPEFGE----------------WE--TS 1456
            .: ||.|  ||.::.::.:|...|  ...|.|:.:.|:....|                |.  ||
  Rat  1509 TI-LSVTPHTTTSVLIRWQPPSEDKINGILLGFRIRYRELLYEGLRGFTLRGINNPGAKWAELTS 1572

  Fly  1457 EVSVDS------QKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNTRTKGQKPKLPEKPRFI-- 1513
            ..|:.:      .::.::.|....||::..:.:|.:|.|              |..|.:..|:  
  Rat  1573 LYSMRNLTRPSLTQYELDNLTKHRRYEIRMSVYNAVGEG--------------PLSPPQEVFVGE 1623

  Fly  1514 ---EVSSNSVSLHFK-------AWKDGGCPMSH----------FVVESKKRDQIEWNQISNNVKP 1558
               ..:..:|::|..       .|:..  |:.:          :..|.::|:..|  ::......
  Rat  1624 AVPTAAPQNVAIHSATATQLDVTWEPP--PLDNQNGDIQGYKIYFWEVQRRNLTE--RVKTLFLA 1684

  Fly  1559 DNNYVVLDLEPATWYNLRITAHNSAG-----------------FTVAEYDFATLTVTGGTIA--- 1603
            :|:..:.:|...|.|.:.:.|.|:||                 .......|:.||.|...::   
  Rat  1685 ENSVKLKNLTGYTAYMVSVAAFNAAGDGPRSTPTQGQTQQAAPSAPGSVKFSELTTTSVNVSWDA 1749

  Fly  1604 -------------------PLDDGSGHGNVHTRIRLPAW-----MPEWLDLNFMVPLIATVVVVA 1644
                               |:|..|....|..:...|.|     :.|.:...|            
  Rat  1750 PQFPNGPLEGYRLVYEPCTPVDGVSKIVTVDVKGNSPLWLKVKDLAEGMTYRF------------ 1802

  Fly  1645 VGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTMGPGATLDKRRPDLRDELGYIAPPNRKLPPV 1709
                       |.:|.....|.     ::..|.|.|||.             |...||.     |
  Rat  1803 -----------RIKAKTFTYGP-----EIEANITTGPGE-------------GAPGPPG-----V 1833

  Fly  1710 PGSNYNTCDRIKRGRGGLRSNHSTWDPRRNPNLYEELKAPP------------VPMHGNHYGHAH 1762
            |        .|.|....:..:.|:.||.:.|.....::|.|            :|.....|    
  Rat  1834 P--------IIVRYSSAIAIHWSSGDPGKGPITRYVIEARPSDEGLWDILIKDIPKEVTSY---- 1886

  Fly  1763 GNAECHYRHPGMEDEICPYATFHLLGFREEMDPTKAMNFQTFPHQNGHAGP-------------- 1813
             ........||:..:      |.::...:....|.:...|:.|.|.  |.|              
  Rat  1887 -TFSMDILKPGVSYD------FRVIAVNDYGFGTPSSPSQSVPAQK--ASPFYEEWWFLVVIALV 1942

  Fly  1814 -------------VPGH---------AGTMLPPGHPGHVHSRSGSQSMPRA-----NRYQRKNSQ 1851
                         :.|.         ||.....|..||....|..:|...|     .|...|||.
  Rat  1943 GLIFILLLVFVLIIRGQSKKYSKKTDAGGNTKSGALGHGEMLSLDESSFPALELNNRRLSVKNSF 2007

  Fly  1852 GGQSSIYTPAPEYDDPANC--AEEDQYRRYTRVNSQGGSLYSGPGPEYDDPANCAPEEDQYGSQY 1914
            ..::.:||.:|....|.:.  ::||..:....:.::..||...|....|...:.:..|....:|.
  Rat  2008 CRKNGLYTRSPPRPSPGSLHYSDEDVTKYNDLIPAESSSLTEKPSEISDSQGSDSEYEVDTNTQK 2072

  Fly  1915 GGPYGQPYDHYGS----RGSMGRRSIGSARNPGNGSPEPPPPPPRNHDMSNSSFNDSKESNEISE 1975
            ...:   .:||.|    ..|..|:..|.:|.......|.....|.:..:.||   :|.:...:..
  Rat  2073 AHSF---VNHYISDPTYYNSWRRQQKGISRAQAYSYTESDSGEPDHVTVPNS---NSTQQGSLFR 2131

  Fly  1976 AECDRDHGPRGNYGAVKRSPQPKDQRTT 2003
            .:..|...|       :..|.|..|::|
  Rat  2132 PKASRTPTP-------QNPPNPPSQQST 2152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 21/97 (22%)
IG 57..133 CDD:214652 18/81 (22%)
IG_like 267..343 CDD:214653 20/87 (23%)
Ig 269..340 CDD:143165 18/75 (24%)
IG_like 353..425 CDD:214653 20/81 (25%)
IGc2 361..413 CDD:197706 15/60 (25%)
I-set 433..527 CDD:254352 30/93 (32%)
IGc2 446..517 CDD:197706 21/70 (30%)
I-set 533..618 CDD:254352 22/89 (25%)
IGc2 544..607 CDD:197706 19/66 (29%)
Ig 641..714 CDD:143165 18/87 (21%)
IGc2 735..804 CDD:197706 16/123 (13%)
I-set 819..914 CDD:254352 20/141 (14%)
Ig 833..921 CDD:299845 19/113 (17%)
FN3 918..1011 CDD:238020 28/100 (28%)
FN3 1018..1116 CDD:238020 29/99 (29%)
FN3 1124..1217 CDD:238020 33/95 (35%)
FN3 1222..1312 CDD:238020 26/91 (29%)
Ig 1339..1406 CDD:299845 16/90 (18%)
FN3 1409..1499 CDD:238020 23/117 (20%)
FN3 1504..1584 CDD:238020 16/101 (16%)
Dscam_C 1890..2008 CDD:289151 22/118 (19%)
Sdk2XP_006247755.1 IG_like 43..112 CDD:214653 19/87 (22%)
IGc2 43..101 CDD:197706 16/76 (21%)
IG_like 123..206 CDD:214653 19/109 (17%)
Ig 135..191 CDD:299845 13/73 (18%)
IG_like 225..307 CDD:214653 21/89 (24%)
IGc2 236..289 CDD:197706 16/60 (27%)
I-set 311..400 CDD:254352 21/88 (24%)
Ig 329..397 CDD:143165 18/67 (27%)
I-set 405..495 CDD:254352 30/93 (32%)
Ig 419..495 CDD:299845 27/79 (34%)
Ig 505..589 CDD:299845 21/85 (25%)
IG_like 505..589 CDD:214653 21/85 (25%)
FN3 593..684 CDD:238020 23/109 (21%)
FN3 696..789 CDD:238020 12/92 (13%)
FN3 797..893 CDD:238020 16/95 (17%)
FN3 898..986 CDD:238020 14/91 (15%)
FN3 996..1090 CDD:238020 25/93 (27%)
FN3 1102..1197 CDD:238020 29/98 (30%)
FN3 1204..1293 CDD:238020 31/90 (34%)
FN3 1304..1397 CDD:238020 27/93 (29%)
FN3 1403..1487 CDD:238020 16/93 (17%)
FN3 1506..1619 CDD:238020 24/127 (19%)
FN3 1629..1722 CDD:238020 15/96 (16%)
FN3 1727..1808 CDD:238020 14/103 (14%)
FN3 1840..1919 CDD:238020 12/89 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 63 1.000 Domainoid score I10040
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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