DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and Ptprk

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001025073.2 Gene:Ptprk / 360302 RGDID:619706 Length:1439 Species:Rattus norvegicus


Alignment Length:1028 Identity:218/1028 - (21%)
Similarity:354/1028 - (34%) Gaps:276/1028 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   763 PGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRN 827
            |.||:.:.:::......|.:.:|:||..:   |.|:                  ..|.|. :|.:
  Rat   160 PNEYQVIFEAEVSGGRSGYIAIDDIQVLS---YPC
D------------------KSPHFL-RLGD 202

  Fly   828 QTARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIRE--EILSTGVMSSLSIKRTERS 890
            .....|:.|..||.|.|...:     .|.:.|..:|.....:.:  .|......:|..::...::
  Rat   203 VEVNAGQNATFQCIATGRDAV-----HNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQEVTKT 262

  Fly   891 DSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRS---VQLSWAQPYDGNSPLDRYI 952
            |..|:.||..:..||..::...::...|..|.|...|...|.:   :||: |....|:.|:....
  Rat   263 DQDLYRCVTQSERGSGVSNFAQLIVREPPRPIAPPQLLGVGPTYLLIQLN-ANSIIGDGPIILKE 326

  Fly   953 IEFKRSRASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIV----AENAIGTSQSSEAVTIITAE 1013
            :|::.:..||:|...|..|.:    ::..|.|.|.|.||::    .|.  ||......:...|..
  Rat   327 VEYRMTSGSWTETHAVNAPTY----KLWHLDPDTEYEIRVLLTRPGEG--GTGLPGPPLITRTKC 385

  Fly  1014 EAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFE-TINFITEEG 1077
            ..|...|:.:|:..:....:.|.|          |.|||       |....:.|. ||.:....|
  Rat   386 AEPMRTPKTLKIAEIQARRIAVDW----------ESLGY-------NITRCHTFNVTICYHYFRG 433

  Fly  1078 KEHN------LEL---------QNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSD 1127
              ||      |::         .:|..||..|:.:...|..|... |||....|.|..|...|..
  Rat   434 --HNESRADCLDMDPKAPQHVVNHLPPYTNVSLKMILTNPEGRKE-SEETIIQTDEDVPGPVPVK 495

  Fly  1128 TACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAP-----------------SDEWYDETKRHY 1175
            :...|.....|.:.| ..||| .||:|..|:|.|:.                 |:.|        
  Rat   496 SLQGTSFENKIFLNW-KEPLE-PNGIITQYEVSYSSIRSFDPAVPVAGPPQTVSNLW-------- 550

  Fly  1176 KKTASSDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAP--TDVKALVMGNAAI 1238
               .|:..|...|...|.|...:.|:|..|.| .:..|:..|....|..|  ..|.|.:...|..
  Rat   551 ---NSTHHVFMHLHPGTTYQFFIRASTVKGFG-PATAINVTTNISAPSLPDYEGVDASLNETATT 611

  Fly  1239 LVSWRPPAQPNGI-ITQYTVY--------SKAEGAETETKTQKVP-HYQMSFEATELEKNKPYEF 1293
            :.....|||..|. |:.|.:.        :|.|....|  ..:|| .||.|     |....||.|
  Rat   612 ITVLLRPAQAKGAPISAYQIVVEQLHPHRTKREAGTME--CYRVPVTYQNS-----LSGGAPYYF 669

  Fly  1294 WV---------TASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTFTA--TFKEDAKMPCL----- 1342
            ..         .|..|:|:.:..|.....|  ..|.|  .::..|.|  :.:::.|..|:     
  Rat   670 AAELPPGNLPEPAPFTVGDNRTYKGFWNPP--LAPRK--GYNIYFQAMSSVEKETKTQCVRIATK 730

  Fly  1343 AVGAPQPEI----------TWKIKGVEFSANDRMRVLPDGSLLIKSV---------NRQDA-GDY 1387
            |....:||:          ..||.|:  ||...:.:|   .||:..|         .|:|| |: 
  Rat   731 AAATEEPEVIPDPAKQTDRVVKIAGI--SAGVLVFIL---LLLVVIVIVKKSKLAKKRKDAMGN- 789

  Fly  1388 SCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLKPHEGDTAPLHGYTLHYKPEFGE 1452
                    .:..:||.:..:....:...||.|....:||.         ...|.::..|:.....
  Rat   790 --------TRQEMTHMVNAMDRSYADQSTLHAEDPLSLTF---------MDQHNFSPRYENHSAT 837

  Fly  1453 WETSEVSVDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNTRTKGQKPKLPEKPRFIEVSS 1517
            .|:|.: :|..::     ||......|.||..: .|...:|:|               :.|.:..
  Rat   838 AESSRL-LDVPRY-----LCEGTESPYQTGQLH-PAIRVADLL---------------QHINLMK 880

  Fly  1518 NSVSLHFKAWKDGGCPMSHFVVES-----KKRDQIE-WNQISNNVKPDNNYVVL---DLEPATWY 1573
            .|.|..||...:     |.|..:|     .|:||.. .|:..|.:..|::.|:|   :.:|::.|
  Rat   881 TSDSYGFKEEYE-----SFFEGQSASWDVAKKDQNRAKNRYGNIIAYDHSRVILQPVEDDPSSDY 940

  Fly  1574 NLRITAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRLPAWMPEWLDLNFMVPLIA 1638
               |.|:...|:....:..||                .|.||..: ...|...|.:.:..:.::.
  Rat   941 ---INANYIDGYQRPSHYIAT----------------QGPVHETV-YDFWRMVWQEQSACIVMVT 985

  Fly  1639 TVVVVAVGIC---------------VVCV-------------ALSRRRADDMR 1663
            .:|.|....|               |.||             .|.||..:::|
  Rat   986 NLVEVGRVKCYKYWPDDTEVYGDFKVTCVEMEPLAEYVVRTFTLERRGYNEIR 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165
IGc2 735..804 CDD:197706 9/40 (23%)
I-set 819..914 CDD:254352 20/96 (21%)
Ig 833..921 CDD:299845 18/89 (20%)
FN3 918..1011 CDD:238020 25/99 (25%)
FN3 1018..1116 CDD:238020 25/113 (22%)
FN3 1124..1217 CDD:238020 25/109 (23%)
FN3 1222..1312 CDD:238020 27/110 (25%)
Ig 1339..1406 CDD:299845 19/91 (21%)
FN3 1409..1499 CDD:238020 18/89 (20%)
FN3 1504..1584 CDD:238020 20/88 (23%)
Dscam_C 1890..2008 CDD:289151
PtprkNP_001025073.2 MAM 31..191 CDD:214533 8/33 (24%)
MAM 35..191 CDD:99706 8/33 (24%)
IG_like 201..287 CDD:214653 17/90 (19%)
Ig 203..283 CDD:299845 17/84 (20%)
fn3 293..371 CDD:278470 22/84 (26%)
FN3 487..588 CDD:238020 26/114 (23%)
PTPc 886..1140 CDD:214550 35/178 (20%)
PTPc 913..1140 CDD:238006 27/146 (18%)
Y_phosphatase 1200..1434 CDD:278528
PTPc 1202..1434 CDD:238006
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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