DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and LRIT3

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_940908.3 Gene:LRIT3 / 345193 HGNCID:24783 Length:679 Species:Homo sapiens


Alignment Length:475 Identity:89/475 - (18%)
Similarity:144/475 - (30%) Gaps:167/475 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   700 TCIASNK-AGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP 763
            ||....: .|......:|...:.|..:...|....|.||:..:.|.|.|||.||:||.:: ..:|
Human   231 TCSEPERLTGILFQRAELEHCLKPSVMTSATKIMSALGSNVLLRCDATGFPTPQITWTRS-DSSP 294

  Fly   764 GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV------QAPPEFT 822
            ..|..:::|....|....:.:..|...:.|.|.|:|.|..|.. .||:.::|      ..||:.:
Human   295 VNYTVIQESPEEGVRWSIMSLTGISSKDAGDYKCKAKNLAGMS-EAVVTVTVLGITTTPIPPDTS 358

  Fly   823 EKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRT 887
            |:                  .|:.|   .|:                                  
Human   359 ER------------------TGDHP---EWD---------------------------------- 368

  Fly   888 ERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYI 952
                                                  |...||||..:|.|..|..:|      
Human   369 --------------------------------------VQPGSGRSTSVSSASSYLWSS------ 389

  Fly   953 IEFKRSRASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPS 1017
                    |:|.         |:......|||.:|.:..:   :...:|..|...|:.|:..|.:
Human   390 --------SFSP---------TSSFSASTLSPPSTASFSL---SPFSSSTVSSTTTLSTSISAST 434

  Fly  1018 ------------GKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETI 1070
                        |..:|:||.....       |.||.:....|.|.......|:.||::  .|.:
Human   435 TMANKRSFQLHQGGKRNLKVAKNGS-------KLPPASTSKKEELALLDQTMLTETNAA--IENL 490

  Fly  1071 NFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPL-----SEEEKQFTAEG----------- 1119
            ..::|. ||......|:...|..|.|...::|.|...|     ...:.|.|.:|           
Human   491 RVVSET-KESVTLTWNMINTTHNSAVTVLYSKYGGKDLLLLNADSSKNQVTIDGLEPGGQYMACV 554

  Fly  1120 -TPSQPPSDTACTTLTSQTI 1138
             ....||....|.|.:::.:
Human   555 CPKGVPPQKDQCITFSTERV 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165 3/14 (21%)
IGc2 735..804 CDD:197706 21/68 (31%)
I-set 819..914 CDD:254352 5/94 (5%)
Ig 833..921 CDD:299845 3/87 (3%)
FN3 918..1011 CDD:238020 19/92 (21%)
FN3 1018..1116 CDD:238020 24/102 (24%)
FN3 1124..1217 CDD:238020 4/15 (27%)
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
LRIT3NP_940908.3 LRR 1 56..79
leucine-rich repeat 59..82 CDD:275378
LRR_8 61..117 CDD:290566
LRR 2 80..103
leucine-rich repeat 83..106 CDD:275378
LRR 3 104..128
LRR_8 105..165 CDD:290566
LRR_4 105..146 CDD:289563
leucine-rich repeat 107..130 CDD:275378
LRR 4 129..151
LRR_4 131..170 CDD:289563
leucine-rich repeat 131..154 CDD:275378
LRR 5 152..175
leucine-rich repeat 155..168 CDD:275378
Ig 267..345 CDD:299845 24/79 (30%)
IG_like 267..345 CDD:214653 24/79 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 351..375 8/116 (7%)
FN3 486..550 CDD:214495 14/66 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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