DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and DIP-beta

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster


Alignment Length:443 Identity:111/443 - (25%)
Similarity:181/443 - (40%) Gaps:84/443 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   325 LCVVN--NSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC--------QYTGN----PI 375
            |.|.|  :|||....:.|:    ||.      ..|:..||.|.|||        :.:|:    |.
  Fly    84 LTVSNKISSVGAFEPDFVI----PLE------NVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPA 138

  Fly   376 KTVSWMK-DGKAI-------------------GHSEPVLRIESVKKEDKGMYQCFVRND-QESAE 419
            | |:|:| |.|||                   .::...|.|..||.||.|.|.|.|..| .:...
  Fly   139 K-VAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDPMKMQT 202

  Fly   420 ASAELKLGGRFDPPVIRQAFQEETMEP-GPSVFLKCVAGGNPTPEISWEL-DGKK-IANNDRYQV 481
            |:.|:.:    .|.:|.:....:.|.| |.|..|.|.|.|:|.|:|:|.. ||:: ||.|..:|.
  Fly   203 ATLEVVI----PPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQK 263

  Fly   482 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKV-GVAEHSAKLNVYGLPYIR---QMEKKAIV 542
            .:..:|.|::   |.::.:..::.|.|.|||.:.| .......||.|:..|.::   |:....::
  Fly   264 TKAQSVEGEM---LTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVHFHPLVQVPNQLVGAPVL 325

  Fly   543 AGETLIVTCPVAGYPIDSIVWERDNRAL-------PINRKQKVFPNGTLIIE---NVER--NSDQ 595
            ...|||  |.|...|.....|:|:|..:       .:..|:    |....||   :::|  :||.
  Fly   326 TDVTLI--CNVEASPKAINYWQRENGEMIIAGDRYALTEKE----NNMYAIEMILHIKRLQSSDF 384

  Fly   596 ATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDL--INMGDSIDLFCQIQKGDRPIKVHWSF 658
            ..|.|::||..| ...|::.:..|..|.......:||  ::..:.:....:.:.|.|.:......
  Fly   385 GGYKCISKNSIG-DTEGTIRLYEMERPGKKILRDDDLNEVSKNEVVQKDTRSEDGSRNLNGRLYK 448

  Fly   659 ERSAGDY---GFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAG 708
            :|:...:   |.||:..:.....|......:.:...:.|..|..|.....|.|
  Fly   449 DRAPDQHPASGSDQLLGRGTMRLIGTFLLALLVLFTALAEAGPTTLSCRTKGG 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653 7/19 (37%)
Ig 269..340 CDD:143165 6/16 (38%)
IG_like 353..425 CDD:214653 30/104 (29%)
IGc2 361..413 CDD:197706 26/83 (31%)
I-set 433..527 CDD:254352 30/97 (31%)
IGc2 446..517 CDD:197706 26/74 (35%)
I-set 533..618 CDD:254352 23/99 (23%)
IGc2 544..607 CDD:197706 20/74 (27%)
Ig 641..714 CDD:143165 12/71 (17%)
IGc2 735..804 CDD:197706
I-set 819..914 CDD:254352
Ig 833..921 CDD:299845
FN3 918..1011 CDD:238020
FN3 1018..1116 CDD:238020
FN3 1124..1217 CDD:238020
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 33/121 (27%)
ig 102..195 CDD:278476 29/103 (28%)
IG_like 219..307 CDD:214653 29/90 (32%)
Ig 221..307 CDD:299845 29/88 (33%)
Ig 311..404 CDD:299845 24/99 (24%)
IG_like 327..405 CDD:214653 22/84 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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