| Sequence 1: | NP_001246162.1 | Gene: | Dscam1 / 35652 | FlyBaseID: | FBgn0033159 | Length: | 2038 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001101611.1 | Gene: | Dscaml1 / 315615 | RGDID: | 1304887 | Length: | 2111 | Species: | Rattus norvegicus |
| Alignment Length: | 2132 | Identity: | 623/2132 - (29%) |
|---|---|---|---|
| Similarity: | 977/2132 - (45%) | Gaps: | 290/2132 - (13%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 23 GSQTLAANPPDADQKGPV----------------------------FLKEPTNRIDFSNSTGAEI 59
Fly 60 ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Fly 125 SIISRDVHVRAVVSQHYEEDIHKAFVIRGNSAILKCDIPSFVADFVNVISWHSDEKENFYPGTEY 189
Fly 190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVSPQLSGNGN 254
Fly 255 QEHITLTRVPKMG-SVTLMCPAQAYPVPFFRWYKFIEGTTRKQAVVLNDR-VKQVSGTLIIKDAV 317
Fly 318 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 382
Fly 383 D------GKAI---GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQA 438
Fly 439 FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAN 503
Fly 504 DGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNR 568
Fly 569 ALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLI 633
Fly 634 NMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAHTGR 698
Fly 699 DTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGD-T 762
Fly 763 PGEYKDLKKSDNIRV-EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLR 826
Fly 827 NQTARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSD 891
Fly 892 SALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFK 956
Fly 957 RSRASW--SEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGK 1019
Fly 1020 PQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLEL 1084
Fly 1085 QNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLES 1149
Fly 1150 ANGVIKTYKVVY---APSDEWYDETKRHYKKTASSDTV-LHGLKKYTNYTMQVLATTAGGDGVRS 1210
Fly 1211 VPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEG------AETETK 1269
Fly 1270 TQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTFTATFK 1334
Fly 1335 EDAKMPCLAVGAPQPEITW----KIKGVEFSANDRMRVLPDGSLLIKSVNRQDAGDYSCHAENSI 1395
Fly 1396 AKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLKPHEGDTAPLHGYTLHYKPEFG-EWETSEVS 1459
Fly 1460 VDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNTRTKGQKPKL-PEKPRFIEVSSNSVSLH 1523
Fly 1524 FKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVKPDNNYVVLDLEPATWYNLRITAHNSAGFTVA 1588
Fly 1589 EYDFATLTVTGGTIAPLDDGSGHGNVHTRIRLPAWMPEWLDLNFMVPLIATVVVVAVGICVVCVA 1653
Fly 1654 LSRRRADDMRGGQKDVYYDVVYNQTMGPGATLDKRRPDLRDELG----YIAPPNRKL-PPVPGSN 1713
Fly 1714 YNTCDRIKRGRGGLRSNHSTWDPRRNPNLYEELKAPPVPMHGNHYGHAHGNAECHYRHPGMEDEI 1778
Fly 1779 CPYATFHLLGFREEMDP------TKAMNFQTFPHQNGHAGPVPGHAGTMLPPGHPGHVHS----- 1832
Fly 1833 -----RSGSQSMPRANRYQRKNSQGGQSSIYTPAP-EYDDPANCAEEDQYRRYTRVNSQGG---- 1887
Fly 1888 ---SLYSGPGPEYDDPANCAPEEDQYGSQYGGPYGQPYDH-----------------YGSRGSMG 1932
Fly 1933 RRSIGSARNPGN----GSPEPP--------PPPPRNHDMSNS-------SFNDSKESN----EIS 1974
Fly 1975 EAECDRDHGPRGNYGAVKRSPQPKDQRTTEEMRKLIERNETGPKQLQLQQAN 2026 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Dscam1 | NP_001246162.1 | IgI_1_Dscam | 38..136 | CDD:409547 | 29/125 (23%) |
| Ig strand A | 39..42 | CDD:409547 | 1/30 (3%) | ||
| Ig strand A' | 48..52 | CDD:409547 | 0/3 (0%) | ||
| Ig strand B | 55..64 | CDD:409547 | 2/8 (25%) | ||
| Ig strand C | 70..76 | CDD:409547 | 1/5 (20%) | ||
| Ig strand C' | 78..81 | CDD:409547 | 1/2 (50%) | ||
| Ig strand D | 87..90 | CDD:409547 | 1/2 (50%) | ||
| Ig strand E | 95..100 | CDD:409547 | 1/4 (25%) | ||
| Ig strand F | 113..121 | CDD:409547 | 3/7 (43%) | ||
| Ig strand G | 124..136 | CDD:409547 | 3/11 (27%) | ||
| IgI_2_Dscam | 246..343 | CDD:409545 | 34/98 (35%) | ||
| Ig strand A | 247..250 | CDD:409545 | 0/2 (0%) | ||
| Ig strand A' | 260..264 | CDD:409545 | 0/3 (0%) | ||
| Ig strand B | 267..274 | CDD:409545 | 3/7 (43%) | ||
| Ig strand C | 282..288 | CDD:409545 | 2/5 (40%) | ||
| Ig strand C' | 294..297 | CDD:409545 | 0/2 (0%) | ||
| Ig strand D | 303..307 | CDD:409545 | 2/4 (50%) | ||
| Ig strand E | 309..315 | CDD:409545 | 3/5 (60%) | ||
| Ig strand F | 322..330 | CDD:409545 | 4/7 (57%) | ||
| Ig strand G | 333..343 | CDD:409545 | 3/9 (33%) | ||
| IgC2_3_Dscam | 346..426 | CDD:409549 | 26/88 (30%) | ||
| Ig strand A | 347..352 | CDD:409549 | 1/4 (25%) | ||
| Ig strand A' | 355..359 | CDD:409549 | 0/3 (0%) | ||
| Ig strand B | 362..372 | CDD:409549 | 1/9 (11%) | ||
| Ig strand C | 377..383 | CDD:409549 | 2/5 (40%) | ||
| Ig strand C' | 384..387 | CDD:409549 | 1/2 (50%) | ||
| Ig strand E | 392..398 | CDD:409549 | 2/5 (40%) | ||
| Ig strand F | 405..413 | CDD:409549 | 5/7 (71%) | ||
| Ig strand G | 416..426 | CDD:409549 | 2/9 (22%) | ||
| IgI_4_Dscam | 432..527 | CDD:409548 | 32/94 (34%) | ||
| Ig strand A | 432..435 | CDD:409548 | 1/2 (50%) | ||
| Ig strand A' | 441..445 | CDD:409548 | 1/3 (33%) | ||
| Ig strand B | 448..457 | CDD:409548 | 2/8 (25%) | ||
| Ig strand C | 462..468 | CDD:409548 | 2/5 (40%) | ||
| Ig strand C' | 470..473 | CDD:409548 | 0/2 (0%) | ||
| Ig strand D | 478..486 | CDD:409548 | 2/7 (29%) | ||
| Ig strand E | 490..499 | CDD:409548 | 2/8 (25%) | ||
| Ig strand F | 506..514 | CDD:409548 | 4/7 (57%) | ||
| Ig strand G | 517..527 | CDD:409548 | 4/9 (44%) | ||
| IgI_5_Dscam | 531..618 | CDD:409550 | 34/86 (40%) | ||
| Ig strand A | 531..533 | CDD:409550 | 1/1 (100%) | ||
| Ig strand A' | 538..542 | CDD:409550 | 0/3 (0%) | ||
| Ig strand B | 545..552 | CDD:409550 | 0/6 (0%) | ||
| Ig strand C | 559..565 | CDD:409550 | 3/5 (60%) | ||
| Ig strand C' | 566..568 | CDD:409550 | 1/1 (100%) | ||
| Ig strand D | 575..579 | CDD:409550 | 1/3 (33%) | ||
| Ig strand E | 582..588 | CDD:409550 | 3/5 (60%) | ||
| Ig strand F | 596..604 | CDD:409550 | 2/7 (29%) | ||
| Ig strand G | 608..618 | CDD:409550 | 3/9 (33%) | ||
| Ig | 621..718 | CDD:472250 | 30/96 (31%) | ||
| Ig strand B | 639..643 | CDD:409353 | 0/3 (0%) | ||
| Ig strand C | 653..657 | CDD:409353 | 0/3 (0%) | ||
| Ig strand E | 684..688 | CDD:409353 | 1/3 (33%) | ||
| Ig strand F | 698..703 | CDD:409353 | 2/4 (50%) | ||
| Ig strand G | 711..714 | CDD:409353 | 0/2 (0%) | ||
| IgI_7_Dscam | 721..815 | CDD:409546 | 29/95 (31%) | ||
| Ig strand A | 721..725 | CDD:409546 | 3/3 (100%) | ||
| Ig strand A' | 730..734 | CDD:409546 | 0/3 (0%) | ||
| Ig strand B | 737..746 | CDD:409546 | 1/8 (13%) | ||
| Ig strand C | 752..758 | CDD:409546 | 3/5 (60%) | ||
| Ig strand C' | 764..767 | CDD:409546 | 0/2 (0%) | ||
| Ig strand D | 775..778 | CDD:409546 | 1/3 (33%) | ||
| Ig strand E | 780..786 | CDD:409546 | 1/5 (20%) | ||
| Ig strand F | 793..801 | CDD:409546 | 6/7 (86%) | ||
| Ig strand G | 806..815 | CDD:409546 | 1/8 (13%) | ||
| Ig | 818..916 | CDD:472250 | 33/97 (34%) | ||
| Ig strand B | 836..840 | CDD:409353 | 1/3 (33%) | ||
| Ig strand C | 849..853 | CDD:409353 | 1/3 (33%) | ||
| Ig strand E | 880..884 | CDD:409353 | 2/3 (67%) | ||
| Ig strand F | 894..899 | CDD:409353 | 2/4 (50%) | ||
| FN3 | <899..1212 | CDD:442628 | 119/318 (37%) | ||
| Ig strand G | 907..910 | CDD:409353 | 0/2 (0%) | ||
| FN3 | 1222..1312 | CDD:238020 | 29/95 (31%) | ||
| Ig | <1339..1406 | CDD:472250 | 21/70 (30%) | ||
| Ig strand C | 1350..1354 | CDD:409358 | 1/7 (14%) | ||
| Ig strand E | 1372..1376 | CDD:409358 | 2/3 (67%) | ||
| Ig strand F | 1386..1391 | CDD:409358 | 2/4 (50%) | ||
| Ig strand G | 1399..1402 | CDD:409358 | 1/2 (50%) | ||
| FN3 | 1409..1499 | CDD:238020 | 24/90 (27%) | ||
| FN3 | 1504..1584 | CDD:238020 | 23/80 (29%) | ||
| Dscam_C | 1893..2008 | CDD:463546 | 27/154 (18%) | ||
| Dscaml1 | NP_001101611.1 | Ig | 85..180 | CDD:472250 | 27/94 (29%) |
| Ig strand B | 101..105 | CDD:409353 | 0/3 (0%) | ||
| Ig strand C | 114..118 | CDD:409353 | 0/3 (0%) | ||
| Ig strand E | 138..142 | CDD:409353 | 2/3 (67%) | ||
| Ig strand F | 158..163 | CDD:409353 | 2/4 (50%) | ||
| Ig strand G | 171..175 | CDD:409353 | 1/3 (33%) | ||
| Ig | 188..276 | CDD:472250 | 33/93 (35%) | ||
| Ig strand B | 200..204 | CDD:409353 | 1/3 (33%) | ||
| Ig strand C | 216..220 | CDD:409353 | 2/3 (67%) | ||
| Ig strand E | 238..242 | CDD:409353 | 2/3 (67%) | ||
| Ig strand F | 253..258 | CDD:409353 | 2/4 (50%) | ||
| Ig strand G | 269..272 | CDD:409353 | 1/3 (33%) | ||
| I-set | 291..369 | CDD:400151 | 32/91 (35%) | ||
| Ig strand B | 301..305 | CDD:409353 | 2/3 (67%) | ||
| Ig strand C | 314..318 | CDD:409353 | 1/3 (33%) | ||
| Ig strand F | 349..354 | CDD:409353 | 2/4 (50%) | ||
| Ig_3 | 375..447 | CDD:464046 | 22/71 (31%) | ||
| Ig | 465..560 | CDD:472250 | 32/94 (34%) | ||
| Ig strand B | 483..487 | CDD:409548 | 1/3 (33%) | ||
| Ig strand C | 496..500 | CDD:409548 | 0/3 (0%) | ||
| Ig strand E | 526..530 | CDD:409548 | 1/3 (33%) | ||
| Ig strand F | 540..545 | CDD:409548 | 2/4 (50%) | ||
| Ig strand G | 553..556 | CDD:409548 | 1/2 (50%) | ||
| Ig | 563..651 | CDD:472250 | 34/87 (39%) | ||
| Ig strand B | 580..584 | CDD:409550 | 0/3 (0%) | ||
| Ig strand C | 593..597 | CDD:409550 | 2/3 (67%) | ||
| Ig strand E | 615..619 | CDD:409550 | 3/3 (100%) | ||
| Ig strand F | 630..635 | CDD:409550 | 2/4 (50%) | ||
| Ig strand G | 644..647 | CDD:409550 | 0/2 (0%) | ||
| Ig | 654..744 | CDD:472250 | 30/96 (31%) | ||
| Ig strand B | 671..675 | CDD:409353 | 0/3 (0%) | ||
| Ig strand C | 685..689 | CDD:409353 | 1/6 (17%) | ||
| Ig strand E | 710..714 | CDD:409353 | 1/3 (33%) | ||
| Ig strand F | 724..729 | CDD:409353 | 2/4 (50%) | ||
| Ig strand G | 737..740 | CDD:409353 | 0/2 (0%) | ||
| Ig_DSCAM | 747..843 | CDD:409397 | 29/95 (31%) | ||
| putative Ig strand A | 747..751 | CDD:409397 | 3/3 (100%) | ||
| putative Ig strand A' | 756..760 | CDD:409397 | 0/3 (0%) | ||
| putative Ig strand B | 762..772 | CDD:409397 | 2/9 (22%) | ||
| putative Ig strand C | 778..784 | CDD:409397 | 3/5 (60%) | ||
| putative Ig strand C' | 791..794 | CDD:409397 | 0/2 (0%) | ||
| putative Ig strand D | 803..806 | CDD:409397 | 0/2 (0%) | ||
| putative Ig strand E | 808..814 | CDD:409397 | 1/5 (20%) | ||
| putative Ig strand F | 821..829 | CDD:409397 | 6/7 (86%) | ||
| putative Ig strand G | 834..843 | CDD:409397 | 1/8 (13%) | ||
| Ig_DSCAM | 844..944 | CDD:409398 | 33/99 (33%) | ||
| putative Ig strand A | 844..847 | CDD:409398 | 0/2 (0%) | ||
| putative Ig strand A' | 855..859 | CDD:409398 | 0/3 (0%) | ||
| putative Ig strand B | 862..869 | CDD:409398 | 1/6 (17%) | ||
| putative Ig strand C | 877..883 | CDD:409398 | 2/5 (40%) | ||
| putative Ig strand C' | 893..896 | CDD:409398 | 1/2 (50%) | ||
| putative Ig strand D | 902..906 | CDD:409398 | 0/3 (0%) | ||
| putative Ig strand E | 908..914 | CDD:409398 | 2/5 (40%) | ||
| putative Ig strand F | 921..929 | CDD:409398 | 3/7 (43%) | ||
| putative Ig strand G | 932..942 | CDD:409398 | 3/9 (33%) | ||
| FN3 | <941..1254 | CDD:442628 | 120/319 (38%) | ||
| fn3 | <1269..1335 | CDD:394996 | 22/70 (31%) | ||
| Ig_3 | 1349..1425 | CDD:464046 | 24/75 (32%) | ||
| FN3 | 1442..1532 | CDD:238020 | 23/89 (26%) | ||
| FN3 | 1546..1618 | CDD:238020 | 24/73 (33%) |