DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and Dscaml1

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:2135 Identity:622/2135 - (29%)
Similarity:976/2135 - (45%) Gaps:296/2135 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 GSQTLAANPPDADQKGPV----------------------------FLKEPTNRIDFSNSTGAEI 59
            |:....|..|...:|||:                            |:.:....:.||:|.|..:
  Rat    39 GAAARPATGPPPRRKGPLYGMWLVTFLLLLDSLHKARPEDVGTSLYFVNDSLQHVTFSSSVGVVV 103

  Fly    60 ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
            .|.|:|:|...:.|..:.|..:.|||.:|.:.::|.|...||....:...:|...|.|.|.|..|
  Rat   104 PCPAAGSPSAALRWYLATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENAAG 168

  Fly   125 SIISRDVHVRAVVSQHYEEDIHKAFVIRGNSAILKCDIPSFVADFVNVISWHSDEKENFYPGTEY 189
            .|.|.::.::||..:.|...:.....:|||.|:.||.|||.|.::|:|:||..| ..:..|    
  Rat   169 KIRSPNIRIKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKD-TVSITP---- 228

  Fly   190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVSPQLSGNGN 254
            :.::.:...|.|:|.:|..||...:|:|.|:|:.:||||.| ...||.:|:|..|:...|.|..:
  Rat   229 ENRFFITSHGGLYISDVQKEDALSTYRCITQHKYSGETRQS-NGARLSVTDPAESIPTILDGFHS 292

  Fly   255 QE----HITLTRVPKMGSVTLMCPAQAYPVPFFRWYKFIEGTTRKQAVVLNDR-VKQVSGTLIIK 314
            ||    |          :|.|.|.|..||:|..||.|  :|    :.:..:.| .|:::| |.|.
  Rat   293 QEVWTGH----------AVELPCAASGYPIPAIRWLK--DG----RPLPADSRWAKRITG-LTIS 340

  Fly   315 DAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 379
            |...||||.|:|.|.|:.|......||||..||...:.|.......|...:.:|..||:|..|:.
  Rat   341 DLRTEDSGTYICEVTNTFGSAEANGVLTVIDPLHVTLTPKKLKTGIGSTVILSCALTGSPEFTIR 405

  Fly   380 WMKD------GKAI---GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVI 435
            |.::      |:||   |.|...|.|.|.:|...|.||||.....::|:..|.:.|  ....|.|
  Rat   406 WYRNTELVLPGEAISIRGLSNETLLISSAQKSHSGAYQCFATRKAQTAQDFAIIVL--EDGTPRI 468

  Fly   436 RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 500
            ..:|.|:.:.||....|.|.|.|.|.|.::|.||.:.:..:..::..||...:|..:|::|:|..
  Rat   469 VSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPVVRDGSHRTNQYTMSDGTTISHMNVTGP 533

  Fly   501 HANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWER 565
            ...|||:|:|.|::.||.||:.|::||.|.|.||.|.....|||...::.|.|.|||..||.|.:
  Rat   534 QIRDGGVYRCTARNSVGSAEYQARINVRGPPSIRAMRNITAVAGRDTLINCRVIGYPYYSIKWYK 598

  Fly   566 DNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYE 630
            |...||.|.:|.||.||||.:.:|::..|:..|.|....|...|...|:.|.|.|.|.|.||.:.
  Rat   599 DALLLPDNHRQVVFENGTLKLTDVQKGMDEGEYLCSVLIQPQLSISQSVHVAVKVPPLIQPFEFP 663

  Fly   631 DLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAH 695
            . .::|..:.:.|.:..||.||::.|   |..|..   .:.....|....|..|.:.|.|.|..|
  Rat   664 P-ASIGQLLYIPCVVSSGDMPIRITW---RKDGQV---IISGSGVTIESKEFMSSLQISSVSLKH 721

  Fly   696 TGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG 760
            .|..||||||.|.|.:....|.|.||||::::|.::....|....:.|..||:|.|:|.||.|.|
  Rat   722 NGNYTCIASNAAATVSRERQLIVRVPPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKVMWKHAKG 786

  Fly   761 D-TPGEYKDLKKSDNIRV-EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTE 823
            . .|.:|..:..:..|:: ...:|.:.::.:.:.|||||:|.||:|:.:|..:.::|:.|...|.
  Rat   787 SGNPQQYHPVPLTGRIQILPNSSLLIRHVLEEDIGYYLCQASNGVGTDISKAMFLTVKIPAMITS 851

  Fly   824 KLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTE 888
            ......|.:|....|.|.|:||:||.|.|...:..:||....||.|..:.....|:|:|.:|..:
  Rat   852 HPNTTIAIKGHAKELNCTARGERPIIIRWEKGDTVIDPDRVMRYAIATKDNGDEVVSTLKLKPAD 916

  Fly   889 RSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYII 953
            |.||..|:|.|.|::|.|...|.:.|||.|:.| .|::.:...||:.|.|.|.:||||.:..:.|
  Rat   917 RGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPP-ELEIREVKARSMNLRWTQRFDGNSIITGFDI 980

  Fly   954 EFKRSRASW--SEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAP 1016
            |:|....||  .:..|.|.| ...:|.:..|.||:.|:||:.:.|.||.|:.|:.:||.|.|.||
  Rat   981 EYKNKSDSWDFKQSTRNISP-TINQANIVDLHPASVYSIRMYSFNKIGRSEPSKELTISTEEAAP 1044

  Fly  1017 SGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHN 1081
            .|.|.::.::||...:::||||.|.:...||.|.||.:||:.::..|:..:..:. :...|....
  Rat  1045 DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGIIRGYQIGYRENSPGSNGQYSIVE-MKATGDSEV 1108

  Fly  1082 LELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPP 1146
            ..|.||:.:.||.||:||||:.|.||.|.|....|.|..|||||.:....::||....:.|..||
  Rat  1109 YTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLEDVPSQPPENVRALSITSDVAVISWSEPP 1173

  Fly  1147 LESANGVIKTYKVVY---APSDEWYDETKRHYKKTASSDTV-LHGLKKYTNYTMQVLATTAGGDG 1207
            ..:.|||:|.|:|::   ....||.:    ....|.:.:.| |.|::|:|||::||||.|..|||
  Rat  1174 RSTLNGVLKGYRVIFWSLYVDGEWGE----MQNVTTTRERVELRGMEKFTNYSVQVLAYTQAGDG 1234

  Fly  1208 VRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEG------AET 1266
            |||..::.||:.|||..|..:||:....::::|||.||.:|||:|.:||::..:.|      :|.
  Rat  1235 VRSSVLYIQTKEDVPGPPAGIKAVPSSASSVVVSWLPPTKPNGVIRKYTIFCSSPGSGQPAPSEY 1299

  Fly  1267 ETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTFTA 1331
            ||..:     |:.:....|.:.:.|..||.|.|:.|.|..|:.:...|:.:.||||.||..|.|.
  Rat  1300 ETSPE-----QLFYRIAHLNRGQQYLLWVAAVTSAGRGNSSEKVTIEPAGKAPAKIISFGGTVTT 1359

  Fly  1332 TFKEDAKMPCLAVGAPQPEITW----KIKGVEFSANDRMRVLPDGSLLIKSVNRQDAGDYSCHAE 1392
            .:.:|.::||.:||.|.|.:.|    :...:..|.:....:..:|:||:::|..:|:|.|:|.|.
  Rat  1360 PWLKDVRLPCNSVGDPAPAVKWTKDSEDSAIPVSLDGHRLIHTNGTLLLRAVKAEDSGYYTCTAT 1424

  Fly  1393 NSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLKPHEGDTAPLHGYTLHYKPEFG-EWETS 1456
            |:...|:|...|:|..||..|.:|:|.|:..::|:...|.:...:.:.|:.|.|..:.. ||:..
  Rat  1425 NTGGFDTIIVNLLVQVPPDQPRLTVSKTSASSITLTWIPGDNGGSSIRGFVLQYSVDNSEEWKDV 1489

  Fly  1457 EVSVDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNTRTKGQKPKL-PEKPRFIEVSSNSV 1520
            .:|...:...::.|.||:.|:|.....|::|:|..|:|:..:|.|::|.. .::..|..::|...
  Rat  1490 FISSSERSFKLDSLKCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPSFSKDQHLFTHINSTHA 1554

  Fly  1521 SLHFKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVKPDNNYVVLDLEPATWYNLRITAHNSAGF 1585
            .|:.:.|.:||||::..|:|.:.:....|..:..|  ......:.:|..||||.||:.|.||||.
  Rat  1555 RLNLQGWNNGGCPITAIVLEYRPKGTWAWQGVRAN--SSTEVFLTELREATWYELRMRACNSAGC 1617

  Fly  1586 TVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRLPAWMPEWLDLNFMVPLIATVVVVAVGICVV 1650
            ......||||...|.||.|:....|.|:               |:..:..:...|::..:|:.::
  Rat  1618 GNETAQFATLDYDGSTIPPIKSAQGEGD---------------DVKKLFTIGCPVILATLGVALL 1667

  Fly  1651 CVALSRRRADDMRGGQKDVYYDVVYNQTMGPGATLDKRRPDLRDELG----YIAPPNRKL-PPVP 1710
            .|...:|:                           :||...|||...    .|:..||.. .||.
  Rat  1668 FVVRKKRK---------------------------EKRLKRLRDAKSLAEMLISKNNRSFDTPVK 1705

  Fly  1711 GSNYNTCDRIKRGRGGLRSNHSTWDPRRNPNLYEELKAPPVPMHGNHYGHAHGNAECHYRHPGME 1775
            |                        |.:.|.|:.::  |.|.:.                   :|
  Rat  1706 G------------------------PPQGPRLHIDI--PRVQLL-------------------IE 1725

  Fly  1776 DEICPYATFHLLGFREEMDP------TKAMNFQTFPHQNGHAGPVPGHAGTMLPPGHPGHVHS-- 1832
            |:    .....||..:...|      ::|:|.|:|            ..|..|  .||..:.|  
  Rat  1726 DK----EGIKQLGDDKATIPVTDAEFSQAVNPQSF------------CTGVSL--HHPALIQSTG 1772

  Fly  1833 --------RSGSQSMPRANRYQRKNSQGGQSSIYTPAP-EYDDPANCAEEDQYRRYTRVNSQGG- 1887
                    |.|:..:.|.|.....:::...||.:|... :...||.....|    :..|.||.| 
  Rat  1773 PLIDMSDIRPGTNPVSRKNVKSAHSTRNRYSSQWTLTKCQASTPARTLTSD----WRTVGSQHGV 1833

  Fly  1888 ------SLYSGPGPEYDDPANCAPEEDQYGSQYGGPYGQPYDH-----------------YGSRG 1929
                  |..:....:.|...|.....:...|.| ....:.|:|                 :.|..
  Rat  1834 TVTESDSYSASLSQDTDKGRNSMVSTESASSTY-EELARAYEHAKLEEQLQHAKFEITECFISDS 1897

  Fly  1930 SMGRRSIGSARNPGN----GSPEPP--------PPPPRNHDMSNS-------SFNDSKESN---- 1971
            |..:.:.|:..|..:    .:|..|        ||.|::.|...:       ..|.|...|    
  Rat  1898 SSDQMTTGTNENADSMTSMSTPSEPGICRFTASPPKPQDADRGKNVAVPIPHRANKSDYCNLPLY 1962

  Fly  1972 EISEAECDRDHGPRGNYGAVKRSPQPKDQRTTEEMRKLIERNETGPKQLQLQQAN 2026
            ..|||...:..|         |.|.|........||.|.....|..:.|.|..|:
  Rat  1963 TKSEAFFRKADG---------REPCPVVPPREASMRNLTRAYHTQARHLTLDPAS 2008

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 29/119 (24%)
IG 57..133 CDD:214652 22/75 (29%)
IG_like 267..343 CDD:214653 28/76 (37%)
Ig 269..340 CDD:143165 26/71 (37%)
IG_like 353..425 CDD:214653 24/80 (30%)
IGc2 361..413 CDD:197706 21/60 (35%)
I-set 433..527 CDD:254352 32/93 (34%)
IGc2 446..517 CDD:197706 23/70 (33%)
I-set 533..618 CDD:254352 33/84 (39%)
IGc2 544..607 CDD:197706 25/62 (40%)
Ig 641..714 CDD:143165 24/72 (33%)
IGc2 735..804 CDD:197706 23/70 (33%)
I-set 819..914 CDD:254352 31/94 (33%)
Ig 833..921 CDD:299845 33/87 (38%)
FN3 918..1011 CDD:238020 34/94 (36%)
FN3 1018..1116 CDD:238020 34/97 (35%)
FN3 1124..1217 CDD:238020 34/96 (35%)
FN3 1222..1312 CDD:238020 29/95 (31%)
Ig 1339..1406 CDD:299845 21/70 (30%)
FN3 1409..1499 CDD:238020 24/90 (27%)
FN3 1504..1584 CDD:238020 23/80 (29%)
Dscam_C 1890..2008 CDD:289151 27/157 (17%)
Dscaml1NP_001101611.1 IG 101..173 CDD:214652 21/71 (30%)
IGc2 101..168 CDD:197706 19/66 (29%)
Ig 183..276 CDD:299845 34/98 (35%)
IG_like 195..276 CDD:214653 33/86 (38%)
I-set 291..369 CDD:254352 31/94 (33%)
IGc2 298..359 CDD:197706 26/77 (34%)
IGc2 386..447 CDD:197706 21/60 (35%)
I-set 466..560 CDD:254352 32/93 (34%)
Ig 466..556 CDD:299845 31/89 (35%)
IGc2 577..635 CDD:197706 24/57 (42%)
IG_like 665..744 CDD:214653 26/84 (31%)
Ig 673..739 CDD:143165 24/71 (34%)
I-set 748..843 CDD:254352 28/94 (30%)
Ig7_DSCAM 765..843 CDD:143211 24/77 (31%)
I-set 849..942 CDD:254352 31/92 (34%)
Ig 861..949 CDD:299845 33/87 (38%)
FN3 945..1039 CDD:238020 34/95 (36%)
FN3 1046..1143 CDD:238020 34/97 (35%)
fn3 1151..1237 CDD:278470 32/89 (36%)
FN3 1249..1340 CDD:238020 29/95 (31%)
IGc2 1364..1428 CDD:197706 19/63 (30%)
FN3 1442..1532 CDD:238020 23/89 (26%)
FN3 1546..1618 CDD:238020 24/73 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4784
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H79549
Inparanoid 1 1.050 968 1.000 Inparanoid score I306
OMA 1 1.010 - - QHG47134
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9015
orthoMCL 1 0.900 - - OOG6_101656
Panther 1 1.100 - - O PTHR10075
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1391
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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