DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and Robo3

DIOPT Version :10

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_063121496.1 Gene:Robo3 / 315564 RGDID:1311018 Length:1413 Species:Rattus norvegicus


Alignment Length:1711 Identity:341/1711 - (19%)
Similarity:550/1711 - (32%) Gaps:525/1711 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   419 EASAELKLGGRFD---------------PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL 468
            :.|..:.|.|.|:               |.::.|. .:..:..|....|.|.|.|.|.|.|.|..
  Rat    49 DPSLNVALPGHFELPPSPGSRVGPEDAMPRIVEQP-PDLLVSRGEPATLPCRAEGRPRPNIEWYK 112

  Fly   469 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAN----DGGLYKCIAKSKVG-VAEHSAKLNVY 528
            :|.::|..........:.:....:.:..|  ||..    |.|:|.|:|::.:| .|..:|.|.|.
  Rat   113 NGARVATAREDPRAHRLLLPSGALFFPRI--VHGRRSRPDEGVYTCVARNYLGAAASRNASLEVA 175

  Fly   529 GL-PYIRQMEKKAIVA-GETLIVTC-PVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE 590
            .| ...||.....:|| ||..::.| |..|:|...:.|::.|..|.....:.....|.|::.:..
  Rat   176 VLRDDFRQSPGNVVVAVGEPAVMECVPPKGHPEPLVTWKKGNTKLKEEEGRITIRGGKLMMSHTF 240

  Fly   591 RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVH 655
            : ||...|.|||.|..|....|:.|:.|:..|..:......::.....::..|::| ||....:.
  Rat   241 K-SDAGMYMCVASNMAGERESGAAELVVLERPSFLRRPINQVVLADAPVNFLCEVQ-GDPQPNLR 303

  Fly   656 W---SFERSAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLT 717
            |   ..|...|.|       ::|::.      .:.|...|....|..||:|.|..|....|..|:
  Rat   304 WRKDDGELPTGRY-------EIRSDH------SLWIEQVSAEDEGTYTCVAENSVGRAEASGSLS 355

  Fly   718 VNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT---PGEYKDLKKSDNIRVE- 778
            |:|||:::.:|.::..|.|.:...:|:..|.|.|.:.|:|.....   |.:  .|:....:.|. 
  Rat   356 VHVPPQFVTKPQNQTAAPGENVSFQCETKGNPPPAIFWQKEGSQVLLFPSQ--SLQPMGRLLVSP 418

  Fly   779 EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM----ISVQA-PPEFTEKLRNQTARRGEPAVL 838
            .|.|::..::..:.|||:|:|::..||.|:..::    .|:.. ||...:...|||...|....|
  Rat   419 RGQLNITEVKIGDGGYYVCQAVSVAGSILAKALLEIKGASIDGLPPIILQGPANQTLVLGSSVWL 483

  Fly   839 QCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAF 903
            .|...|.....:.|..:...|...| :::.:.:.       .:|.|...:..|...::|||.::.
  Rat   484 PCRVIGNPQPNVQWKKDETWLQGDN-SQFNLMDN-------GTLYIASVQEMDMGFYSCVAKSSI 540

  Fly   904 GSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASWSEIDRV 968
            |  :|:.|                         ||.                 |.|..|.     
  Rat   541 G--EATWN-------------------------SWL-----------------RKREHWG----- 556

  Fly   969 IVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTTM 1033
            ..||..||       |..                             |.|.|....|..|...::
  Rat   557 ASPGPATE-------PGN-----------------------------PPGPPSQPIVTEVTTNSI 585

  Fly  1034 RVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFE--------TINFITEEGKEHNLELQNLRVY 1090
            .:||||.|::           |.:.    :|||.|        |...:.:..:.....:..|:..
  Rat   586 TLTWKPNPQS-----------GARA----TSYVIEAFSQAAGNTWRTVADGVQLETHTVSGLQPN 635

  Fly  1091 TQYSVVIQAFNKIGAGPLSE----EEKQFTAEGTPSQPPSD---------------TACTTLTSQ 1136
            |.|..:::|   :||..|||    .|...|.:.:.|:|..|               .....|..:
  Rat   636 TIYLFLVRA---VGAWGLSEPSPVSEPVQTQDSSLSRPVEDPWKGQQGLAEVAVRMQEPIVLGPR 697

  Fly  1137 TIRVGW-VSPPLESANGVIKTYKVVYAPSDEWYDETKRHYKKTASSDTVLHGLKKYTNYTMQVLA 1200
            |::|.| |..|.:...|...::::.......|   |....:......|||.||...:...::|..
  Rat   698 TLQVSWTVEGPGQLVQGFRVSWRIAGLDQGSW---TALDVQSPHKQSTVLRGLPPGSQIQIKVQV 759

  Fly  1201 TTAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMG---NAAILVSWRP--PAQPNGIITQYTVYSK 1260
            ....|.|..|..:......:.|..|....|:.:|   |::|.|||.|  |:|.||:||:|.::  
  Rat   760 QGQEGLGAESPSVTRSIPEEAPSGPPQGVAVALGGDRNSSITVSWEPPLPSQQNGVITEYQIW-- 822

  Fly  1261 AEGAETETK-TQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIAS 1324
            ..|.|:... .:....:..|.....|.....|...|.|:|:.|.|..|..::             
  Rat   823 CLGNESRFHLNRSAAGWARSVMFRGLLPGLLYRAIVAAATSAGVGVASAPVL------------- 874

  Fly  1325 FDDTFTATFKEDAKMPCLAVGAPQPEITWKIKGVEFSANDRMRVLPD-----------GSLLI-- 1376
                        .::|...|..|.||::      |..|....|||..           |:||:  
  Rat   875 ------------VQLPFPPVAEPGPEVS------EGLAERLSRVLRKPAFLAGSSAACGALLLGL 921

  Fly  1377 ------KSVNRQDAGDYSC-----------HAENSIAKDSITHKLIVLAPPQS------------ 1412
                  :...|::...|:.           |:|......|        .||..            
  Rat   922 CAALYRRQKQRKELSHYTASFAYTPAVSFPHSEGLSGSSS--------RPPMGLGPAAYPWLADS 978

  Fly  1413 -PHVTLSATTTDALTVKLKPHEGDTAPLHGYTLHYKPEFGEWETSEVSVDSQKHNIEGLLCGSRY 1476
             ||.:.|.:..:.        .|...|                 |....|.:.:|..|:   |.|
  Rat   979 WPHPSRSPSAQEP--------RGSCCP-----------------SNPDPDDRYYNEAGI---SLY 1015

  Fly  1477 QVY-ATGFNNIGAGEASDILNTRTKGQKPKLPEKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVE 1540
            ... |.|.|..|.|.....::                 .|.....:.|      ||.| .|...:
  Rat  1016 LAQTARGANAPGEGPVYSTID-----------------PVGEELQTFH------GGFP-QHSSGD 1056

  Fly  1541 SKKRDQI---EWNQISNNVKPDNNYVV---LDLEPATWYNLRITAHNSAGFTVAEYDFATLTVTG 1599
            .....|.   ||::..:..:.....::   :.:...:|.........|...:..|          
  Rat  1057 PSTWSQYAPPEWSEGDSGARGGKGKLLGKPVQMPSLSWPEALPPPPPSCELSCPE---------- 1111

  Fly  1600 GTIAPLDDGSGHGNVHTRIRLPAWMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRG 1664
               .|.::..|..:      |..|.|...:...::...::      |.|:|..|.....:.....
  Rat  1112 ---GPEEELKGSSD------LEEWCPPMPEKKHLIDSRSS------GACMVAPARGETPSPTSSY 1161

  Fly  1665 GQKDVYYDVVYNQTMGPGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGRGGLRS 1729
            ||:..             |||....||               ||.|.|:.               
  Rat  1162 GQQST-------------ATLTPSPPD---------------PPQPPSDI--------------- 1183

  Fly  1730 NHSTWDPRR---NPNLYEELKAPPVPMH-GNHYGHAHGNAECHYRHPGMEDEICPYATFHLLGFR 1790
            .|....|||   .|:....:..|.:..| |...|...|                |..::|     
  Rat  1184 PHLHQMPRRVPLGPSSPLSVSQPALSSHDGRPVGLGAG----------------PIVSYH----- 1227

  Fly  1791 EEMDPTKAMNFQTFPHQNGHAGPVPGHA-----------GTMLPPGHPGHVHSRSGSQSMPRANR 1844
                |:.:              |||..|           |.|.||.|......|..::::|    
  Rat  1228 ----PSPS--------------PVPSTASSAPGRTRQVTGEMTPPLHGHRARIRKKTKALP---- 1270

  Fly  1845 YQRKNSQGGQSSIYTPAPEYDDPANCAEEDQYRRYTRVNSQGGSL---YSG-------------- 1892
            ::|::|.|.......|.||        ||..:....|......||   :||              
  Rat  1271 HRREHSPGDLPPPPLPPPE--------EETSWPLGLRAAGSMSSLEREHSGERRVAQAVPLGAQP 1327

  Fly  1893 PGPE---YDDPA--NCAPEEDQYGSQYGGPYGQP-YDHYG-------------SRGSMGRRSIGS 1938
            ||.:   :.|.|  .||.||...      |||:| :..:|             ||||...|....
  Rat  1328 PGAQRGPHPDAALLGCAAEEAWL------PYGRPSFLSHGQGTSTCSTAGSNSSRGSNSSRGSRG 1386

  Fly  1939 ARNPGNG---SPEPPPPPPRN 1956
            :|.||..   |......|.||
  Rat  1387 SRGPGRSRSRSQSQSQRPGRN 1407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 IgI_1_Dscam 38..136 CDD:409547
Ig strand A 39..42 CDD:409547
Ig strand A' 48..52 CDD:409547
Ig strand B 55..64 CDD:409547
Ig strand C 70..76 CDD:409547
Ig strand C' 78..81 CDD:409547
Ig strand D 87..90 CDD:409547
Ig strand E 95..100 CDD:409547
Ig strand F 113..121 CDD:409547
Ig strand G 124..136 CDD:409547
IgI_2_Dscam 246..343 CDD:409545
Ig strand A 247..250 CDD:409545
Ig strand A' 260..264 CDD:409545
Ig strand B 267..274 CDD:409545
Ig strand C 282..288 CDD:409545
Ig strand C' 294..297 CDD:409545
Ig strand D 303..307 CDD:409545
Ig strand E 309..315 CDD:409545
Ig strand F 322..330 CDD:409545
Ig strand G 333..343 CDD:409545
IgC2_3_Dscam 346..426 CDD:409549 1/6 (17%)
Ig strand A 347..352 CDD:409549
Ig strand A' 355..359 CDD:409549
Ig strand B 362..372 CDD:409549
Ig strand C 377..383 CDD:409549
Ig strand C' 384..387 CDD:409549
Ig strand E 392..398 CDD:409549
Ig strand F 405..413 CDD:409549
Ig strand G 416..426 CDD:409549 1/6 (17%)
IgI_4_Dscam 432..527 CDD:409548 25/99 (25%)
Ig strand A 432..435 CDD:409548 1/2 (50%)
Ig strand A' 441..445 CDD:409548 0/3 (0%)
Ig strand B 448..457 CDD:409548 2/8 (25%)
Ig strand C 462..468 CDD:409548 3/5 (60%)
Ig strand C' 470..473 CDD:409548 1/2 (50%)
Ig strand D 478..486 CDD:409548 0/7 (0%)
Ig strand E 490..499 CDD:409548 1/8 (13%)
Ig strand F 506..514 CDD:409548 4/7 (57%)
Ig strand G 517..527 CDD:409548 4/10 (40%)
IgI_5_Dscam 531..618 CDD:409550 25/88 (28%)
Ig strand A 531..533 CDD:409550 0/1 (0%)
Ig strand A' 538..542 CDD:409550 0/3 (0%)
Ig strand B 545..552 CDD:409550 2/7 (29%)
Ig strand C 559..565 CDD:409550 1/5 (20%)
Ig strand C' 566..568 CDD:409550 0/1 (0%)
Ig strand D 575..579 CDD:409550 0/3 (0%)
Ig strand E 582..588 CDD:409550 2/5 (40%)
Ig strand F 596..604 CDD:409550 4/7 (57%)
Ig strand G 608..618 CDD:409550 2/9 (22%)
Ig 621..718 CDD:472250 20/99 (20%)
Ig strand B 639..643 CDD:409353 0/3 (0%)
Ig strand C 653..657 CDD:409353 1/6 (17%)
Ig strand E 684..688 CDD:409353 0/3 (0%)
Ig strand F 698..703 CDD:409353 2/4 (50%)
Ig strand G 711..714 CDD:409353 0/2 (0%)
IgI_7_Dscam 721..815 CDD:409546 24/101 (24%)
Ig strand A 721..725 CDD:409546 2/3 (67%)
Ig strand A' 730..734 CDD:409546 0/3 (0%)
Ig strand B 737..746 CDD:409546 1/8 (13%)
Ig strand C 752..758 CDD:409546 1/5 (20%)
Ig strand C' 764..767 CDD:409546 0/2 (0%)
Ig strand D 775..778 CDD:409546 0/2 (0%)
Ig strand E 780..786 CDD:409546 2/5 (40%)
Ig strand F 793..801 CDD:409546 5/7 (71%)
Ig strand G 806..815 CDD:409546 1/12 (8%)
Ig 818..916 CDD:472250 21/97 (22%)
Ig strand B 836..840 CDD:409353 1/3 (33%)
Ig strand C 849..853 CDD:409353 0/3 (0%)
Ig strand E 880..884 CDD:409353 1/3 (33%)
Ig strand F 894..899 CDD:409353 1/4 (25%)
FN3 <899..1212 CDD:442628 62/340 (18%)
Ig strand G 907..910 CDD:409353 1/2 (50%)
FN3 1222..1312 CDD:238020 28/95 (29%)
Ig <1339..1406 CDD:472250 18/96 (19%)
Ig strand C 1350..1354 CDD:409358 1/3 (33%)
Ig strand E 1372..1376 CDD:409358 2/3 (67%)
Ig strand F 1386..1391 CDD:409358 1/15 (7%)
Ig strand G 1399..1402 CDD:409358 1/2 (50%)
FN3 1409..1499 CDD:238020 18/103 (17%)
FN3 1504..1584 CDD:238020 11/85 (13%)
Dscam_C 1893..2008 CDD:463546 25/86 (29%)
Robo3XP_063121496.1 None
Blue background indicates that the domain is not in the aligned region.

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