DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and Fas2

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001284854.1 Gene:Fas2 / 31364 FlyBaseID:FBgn0000635 Length:885 Species:Drosophila melanogaster


Alignment Length:761 Identity:195/761 - (25%)
Similarity:300/761 - (39%) Gaps:161/761 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   440 QEETMEP-GPSVFLKCVAGGNPT---PEISWELDGKKIAN-------NDRYQVGQYV-TVNGDVV 492
            ||...:| |..:.|.|    .||   |.:..:|..|...|       |.|.|...|. |:.|:.:
  Fly    39 QEVQRKPVGKPLILTC----RPTVPEPSLVADLQWKDNRNNTILPKPNGRNQPPMYTETLPGESL 99

  Fly   493 SYLNITSVHANDGGLYKCIAK-SKVGVAEHSAKLNVY-GLPYIRQMEKKAIVAGETLIVTCPVAG 555
            : |.|||:....||.|.|.|. :...:.|....:..| .:.:....|.:....|:..:|.|.|..
  Fly   100 A-LMITSLSVEMGGKYYCTASYANTEILEKGVTIKTYVAITWTNAPENQYPTLGQDYVVMCEVKA 163

  Fly   556 YPIDSIVWERDNRALPI---NRKQKVFPNGTLIIENVERNSDQATYTC-VAKNQEGYSARGSLEV 616
            .|..:|.|.|:..  ||   |.|..|..|| |:|.||: .||:..||| .|..:.|.....::.|
  Fly   164 DPNPTIDWLRNGD--PIRTTNDKYVVQTNG-LLIRNVQ-ESDEGIYTCRAAVIETGELLERTIRV 224

  Fly   617 QVMVLPQIV------------PFAYEDLINMGDSIDLFCQIQKGDRPI-KVHW---SFERSAGDY 665
            :|.:.|:|:            |||..            |..:  .:|: ::.|   :.:.:....
  Fly   225 EVFIQPEIISLPTNLEAVEGKPFAAN------------CTAR--GKPVPEISWIRDATQLNVATA 275

  Fly   666 GFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTD 730
            ...||.||         |.:::|.|.|....|..||:|.|:||.......|.|.|.|: |.|..:
  Fly   276 DRFQVNPQ---------TGLVTISSVSQDDYGTYTCLAKNRAGVVDQKTKLNVLVRPQ-IYELYN 330

  Fly   731 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV-------EE-----GTLH 783
            ...|:..:..:.|:|.|.|.|.:|:::  ..|..||.:.::.|:.|:       ||     |||.
  Fly   331 VTGARTKEIAITCRAKGRPAPAITFRR--WGTQEEYTNGQQDDDPRIILEPNFDEERGESTGTLR 393

  Fly   784 VDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFT--EKLRNQTARRGEPAVLQCEAKGEK 846
            :.|.:::::|.|.|.|.|. |:.......|:|:..|:|:  ::|....:.....|.|.|.|.|..
  Fly   394 ISNAERSDDGLYQCIARNK-GADAYKTGHITVEFAPDFSHMKELPPVFSWEQRKANLSCLAMGIP 457

  Fly   847 PIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASIN 911
            ...|.|:.|..::    .:.|....:|:.||..|.|.:....|...:.:.|:|||..|:.:..:.
  Fly   458 NATIEWHWNGRKI----KDLYDTNLKIVGTGPRSDLIVHPVTRQYYSGYKCIATNIHGTAEHDMQ 518

  Fly   912 MIVQEVPEMPYALK---------VLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRS--------- 958
            :....||:.....|         ..|..|.|.:|        ..|:..|.:::|.:         
  Fly   519 LKEARVPDFVSEAKPSQLTATTMTFDIRGPSTEL--------GLPILAYSVQYKEALNPDWSTAY 575

  Fly   959 RASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIG------TSQSSEAVTIITAEEAPS 1017
            ..|||.....||.|         |.|.|.|:.|..|.|.:|      ..|.|........|..|.
  Fly   576 NRSWSPDSPYIVEG---------LRPQTEYSFRFAARNQVGLGNWGVNQQQSTPRRSAPEEPKPL 631

  Fly  1018 GKP-QNIKVEPV----NQTTMRVTWKPPPRTEWNGEILG-----YYVGYKLSNT--------NSS 1064
            ..| |:.|.|||    ......:.|..|..   |||.:.     |..|.|:|.|        |:.
  Fly   632 HNPVQHDKEEPVVVSPYSDHFELRWGVPAD---NGEPIDRYQIKYCPGVKISGTWTELENSCNTV 693

  Fly  1065 YVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIG-AGPLS 1109
            .|.||.:|          |:..|...|.|.:.::|.|.|| :.|.|
  Fly   694 EVMETTSF----------EMTQLVGNTYYRIELKAHNAIGYSSPAS 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352 28/99 (28%)
IGc2 446..517 CDD:197706 25/83 (30%)
I-set 533..618 CDD:254352 28/88 (32%)
IGc2 544..607 CDD:197706 25/66 (38%)
Ig 641..714 CDD:143165 18/76 (24%)
IGc2 735..804 CDD:197706 22/80 (28%)
I-set 819..914 CDD:254352 23/96 (24%)
Ig 833..921 CDD:299845 22/87 (25%)
FN3 918..1011 CDD:238020 25/116 (22%)
FN3 1018..1116 CDD:238020 31/111 (28%)
FN3 1124..1217 CDD:238020
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Fas2NP_001284854.1 IG_like 39..133 CDD:214653 28/98 (29%)
IG_like 144..226 CDD:214653 28/85 (33%)
IGc2 152..209 CDD:197706 24/60 (40%)
I-set 230..319 CDD:254352 24/111 (22%)
IGc2 243..309 CDD:197706 19/88 (22%)
IG_like 330..424 CDD:214653 25/96 (26%)
IGc2 339..412 CDD:197706 21/74 (28%)
Ig 447..518 CDD:143165 20/74 (27%)
fn3 534..611 CDD:278470 21/93 (23%)
FN3 640..735 CDD:238020 28/103 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10075
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.000

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