DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and DIP-alpha

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001259218.1 Gene:DIP-alpha / 31322 FlyBaseID:FBgn0052791 Length:554 Species:Drosophila melanogaster


Alignment Length:511 Identity:104/511 - (20%)
Similarity:184/511 - (36%) Gaps:131/511 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   596 ATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWSFER 660
            ||:||..::..||.. |.|:.....:..|    :|::|                    .|     
  Fly    59 ATFTCHVRHLGGYRV-GWLKADTKAIQAI----HENVI--------------------TH----- 93

  Fly   661 SAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWI 725
                      .|::..:.:.:.|..:.|.:.|....|...|..:.....:.... |.|.:||.:|
  Fly    94 ----------NPRVTVSHLDQNTWNLHIKAVSEEDRGGYMCQLNTDPMKSQIGF-LDVVIPPDFI 147

  Fly   726 LEPT--DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT------- 781
            .|.|  |....:||..::.|:|.|:|:|.|||::..|:      ::...||:    ||       
  Fly   148 SEDTSSDVIVPEGSSVRLTCRARGYPEPIVTWRREDGN------EIVLKDNV----GTKTLAPSF 202

  Fly   782 ----LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQT--ARRGEPAVLQC 840
                |.:..|.:...|.|||.|.||:...:|..|.:|:...|..  ::.||.  |..|....::|
  Fly   203 RGEVLKLSKISRNEMGSYLCIASNGVPPSVSKRISLSIHFHPVI--QVPNQLVGAPLGTDVQIEC 265

  Fly   841 EAKGEKPIGILWNMNNMRLDPKNDNRYTIR---EEILSTG-------------VMSSLSIKRTER 889
                           ::...||:.| |.|:   |.|:::|             ...|:.:::.::
  Fly   266 ---------------HVEASPKSIN-YWIKDTGEMIVTSGKYHVQESSQSMYETKMSMIVRKFQK 314

  Fly   890 SDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIE 954
            .|...:.|:|.|:.|..|:||.:  .|:|........|:..|:......:...|.|.     |::
  Fly   315 DDVGSYRCIAKNSLGEVDSSIRL--YEIPGPNRNKNPLNGGGKGGGAGGSLDADAND-----ILK 372

  Fly   955 FKRS-RASWSEIDRVIVPGHTTEAQVQ--------KLSPATTYNI-RIVAENAIGTSQSSEAV-- 1007
            .|:. :.::...|..:..|...:.:.:        .|||...|.. ...|.:..|.|..::.:  
  Fly   373 QKQQVKVTYQPEDEELQYGSVEDFEAEGGEGGGLTPLSPHVYYTSGNKPATHKPGNSGGNQHLHQ 437

  Fly  1008 ------------TIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILG 1051
                        ........|.|.|.......:......:|.||||....|.|:.|
  Fly   438 QHHHHHHHNNNNNNQQHSGGPGGGPTGGDAGSLGGEMGGITRKPPPYYGGNTEVRG 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352 8/21 (38%)
IGc2 544..607 CDD:197706 4/10 (40%)
Ig 641..714 CDD:143165 7/72 (10%)
IGc2 735..804 CDD:197706 24/79 (30%)
I-set 819..914 CDD:254352 23/112 (21%)
Ig 833..921 CDD:299845 21/103 (20%)
FN3 918..1011 CDD:238020 16/116 (14%)
FN3 1018..1116 CDD:238020 10/34 (29%)
FN3 1124..1217 CDD:238020
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
DIP-alphaNP_001259218.1 IG_like 49..129 CDD:214653 18/109 (17%)
Ig 51..131 CDD:299845 18/111 (16%)
I-set 144..240 CDD:254352 31/105 (30%)
IGc2 159..228 CDD:197706 23/78 (29%)
Ig 244..337 CDD:299845 23/110 (21%)
I-set 244..337 CDD:254352 23/110 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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