DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and tek

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_009299388.1 Gene:tek / 30747 ZFINID:ZDB-GENE-990415-56 Length:1117 Species:Danio rerio


Alignment Length:586 Identity:105/586 - (17%)
Similarity:191/586 - (32%) Gaps:166/586 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   792 EGYY-------------LCEAING-IGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEA 842
            :|||             .|:...| :.:|..........:.|..:. ||:.....|....:.|.|
Zfish   307 DGYYGAGCTQKCVCAKGRCDRFRGCVCAGRHGSRCEEADSSPVISH-LRDVEINTGVELSVNCSA 370

  Fly   843 KGEKPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTER---SDSALFTCVATNAFG 904
            .| :|..:..::..:     ..||.||......|....|.|:.|.::   |.:..:.|...|...
Zfish   371 SG-RPAPLHGDITLI-----TANRTTIAAVDTHTLNDQSTSVFRVQQVRVSSAGRWRCQVNNTHA 429

  Fly   905 --SDDASINMIVQEVPEMPYALKVLDKSG--RSVQLSWAQPYDGNSPLDRYIIEFKRSRA-SWSE 964
              .|:.::.:   :||..|....||..||  ..:.|...:||.|:.|:....:.::.:.| :||.
Zfish   430 QVEDEFTVEV---KVPPRPQNPPVLQGSGPRHLLLLLNTEPYSGDGPIATTTLLYRPASAHTWSS 491

  Fly   965 IDRVIVPGHTTEAQVQKLSPATTY--NIRIVAENAIGTSQSSEAVTIIT-AEEAPSGKPQNIKVE 1026
            .     ..|....::..|.|.|.|  .:::......|..|:..|.|..| ..|.|.|    :|:.
Zfish   492 F-----TAHGPLVRLDNLYPMTQYLTQVQLSRPGPGGAGQAGPAATFSTQVLELPVG----VKLS 547

  Fly  1027 PVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1091
            .|:||.:.::|...|..:        :..|::|                                
Zfish   548 AVSQTALLLSWDIAPAEQ--------HCTYEVS-------------------------------- 572

  Fly  1092 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKT 1156
                .:||                   |.|                              |.::|
Zfish   573 ----CLQA-------------------GAP------------------------------GTLRT 584

  Fly  1157 YKVVYAPSDEWYDETKRHYKKTASSDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDV 1221
            :::   ||:              ||...|..||....|...|.::...|....|......::|::
Zfish   585 FQL---PSN--------------SSAMHLSDLKPRHKYQCTVRSSCGVGQNHPSASAWTLSDPEL 632

  Fly  1222 PEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGA------ETETKTQKVPHYQMSF 1280
            |..|.::....:.:.:.:::| ..|:...:......:.:.|.|      |...:||::   .|.|
Zfish   633 PPPPANISIWNISDTSAVLTW-AVAEGESVSRAVIRFQQVEQAQYRQQVELPVQTQQL---HMRF 693

  Fly  1281 EATELEKNKPYEFWVTASTTIGEGQQSK--SIVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLA 1343
            :...|..|..|:..:.....:||..:|.  |::.:|..:..|..|:............|.|.|..
Zfish   694 QLLGLRPNTGYQLQLWTVNNMGESAESPPVSLMTLPQQESSALFAAHGHLLLYAILGSAGMTCCT 758

  Fly  1344 V 1344
            |
Zfish   759 V 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165
IGc2 735..804 CDD:197706 5/25 (20%)
I-set 819..914 CDD:254352 20/99 (20%)
Ig 833..921 CDD:299845 19/92 (21%)
FN3 918..1011 CDD:238020 23/97 (24%)
FN3 1018..1116 CDD:238020 11/97 (11%)
FN3 1124..1217 CDD:238020 13/92 (14%)
FN3 1222..1312 CDD:238020 18/97 (19%)
Ig 1339..1406 CDD:299845 3/6 (50%)
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
tekXP_009299388.1 Ig_Tie2_1 25..121 CDD:287411
EGF_2 224..255 CDD:285248
IG_like 354..439 CDD:214653 18/90 (20%)
fn3 541..621 CDD:278470 26/193 (13%)
FN3 633..717 CDD:214495 15/87 (17%)
PTKc_Tie2 809..1111 CDD:133219
STYKc 817..1085 CDD:214568
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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