DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and Csf3r

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_017448778.1 Gene:Csf3r / 298518 RGDID:1309114 Length:877 Species:Rattus norvegicus


Alignment Length:907 Identity:171/907 - (18%)
Similarity:288/907 - (31%) Gaps:301/907 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   617 QVMVLPQIVPFAYEDLINMGDSIDLFCQI----QKGDRPIKVHWSFERSAGDYGFDQVQPQMRTN 677
            |:.:.|.||        ::||.:...|.|    .|.||..|:.|..:....       ||..|.:
  Rat    28 QIRISPPIV--------HLGDPVLASCTISPNCSKLDRQPKILWRLQDEPN-------QPGDRQH 77

  Fly   678 RISE--KTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAK 740
            .:.:  :.|:|::|..:.........:..|.:.......:|....||             .|.:.
  Rat    78 HLPDGSQESIITLPHLNYTQAFLFCLVPWNNSFQ
VLDQAELRAGYPP-------------ASPSN 129

  Fly   741 VEC---------KADGFPKPQVTWKKAVGDTPGEY--KDLKKSDNIRVEEGTLHVDNIQKTNEGY 794
            :.|         .....|.|:.       ..|..:  |..:.....:.:.||: :|.:.|.....
  Rat   130 LSCLMYLTTNSLVCQWEPGPET-------HLPTSFILKSFRSRTGCQYQGGTI-LDCMPKKRHSN 186

  Fly   795 YLC-----------------EAINGIGSGLSAVIMI--------SVQAPPEFTEKLRNQTARRGE 834
              |                 :|.|.:||..|..:.|        |:..||         .|.:.|
  Rat   187 --CSIPRKHLLLYQNMVIWVQAENMLGSSESPKLCID
PMDVGRESLTTPP---------PAVKLE 240

  Fly   835 PAVLQ--------------------------------CEAKGEKPI-GILWNMNNMRLDPKNDNR 866
            |.:||                                ||.:.:..: |..|.:    :.|:..:|
  Rat   241 PPMLQALDIGHDIVSRQPGCLWLSWKPWKPSEFMEQECELRYQPQLEGANWTL----VRPRKTSR 301

  Fly   867 YTIREEILSTGV--------MSSLSIKRTERSD------SALFT----CVATNAFGS-DDASINM 912
            :....|....|.        :|.|. ..|:|.:      :.::|    |:.::..|. ...|..:
  Rat   302 WRWGMERGQAGFSVTPPTHQVSHLP-SSTDRFELCSLHQAPVYTLQLRCIRSSLPGLWSSWSPGL 365

  Fly   913 IVQEVPEMP-------YALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASWSEID---R 967
            .::...:.|       :..|.||.....:||.| :|    :||.:...:.:....|||..|   |
  Rat   366 QLRPTIKAPTIRLDTWWQKKHLDPETVRMQLFW-KP----TPLQKDSGQIQGYLLSWSCPDGQGR 425

  Fly   968 VIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTS---------QSSEAVTIITAE---------- 1013
            ::...:|||.......|:...|:.:||.|:.|||         ....|||.:.|.          
  Rat   426 IMHLCNTTELSCTFHLPSEAQNVTLVAYNSAGTSSPTLVVFLEHEGPAVTSLHAMAQDLGSIWVD 490

  Fly  1014 -EAPSGKPQNIKVE--PVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITE 1075
             ||||..||...:|  |.:......:|    |.|.||...|                     |..
  Rat   491 WEAPSLLPQGYLIEWGPDSHKYSNNSW----RIEPNGNTTG---------------------ILL 530

  Fly  1076 EGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQT-IR 1139
            |...|..:|..:.|...|           .|.:......:|..|..:.|.:.........:| .:
  Rat   531 EDNIHPFQLYRITVAPLY-----------PGTVGPPVNVYTYSGEKALPHAPELYLKHVGRTWAQ 584

  Fly  1140 VGWV--SPPLESANGVIK-TYKVVYAPSDEWYDETKRHYKKTAS---SDTVLHGLKKYTNYTMQV 1198
            :.||  :|.|    |:|. |...::     |.|.....:..|.:   .|.||..||..:.|.:.:
  Rat   585 LEWVPETPWL----GMIPLTNYTIF-----WTDARDHSFSVTLNISFHDFVLDHLKPASLYHVYL 640

  Fly  1199 LATTAGGD----------------------GVRS---VPIHCQTE-------------PDVPEAP 1225
            :||:..|.                      |:..   :.|.|.|.             |:||: |
  Rat   641 MATSRAGSTNSTGLTLMTMALDSSDVNIFLGILCFVLLSITCATAWFCCKQSRKTFFWPNVPD-P 704

  Fly  1226 TDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAETETKTQKVPHYQMSFEATELEKNKP 1290
            ..         :.|.:|.|.     |:|:.|....:....:.....|:         ||||::|.
  Rat   705 AH---------SSLSAWVPT-----IMTEETFQLPSFWGSSVPSITKI---------TELEEDKK 746

  Fly  1291 YEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAP-QPEI 1351
            ...| ..|.:.|.|.....:.|......|.:|::.....::|  .|..:....:|:| .||:
  Rat   747 PTHW-DPSESSGTGSLPAVVQAYVLQGDPREISNQFQPPSST--NDQVLYGQVLGSPTSPEV 805

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706