DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and Dscam4

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster


Alignment Length:2018 Identity:747/2018 - (37%)
Similarity:1118/2018 - (55%) Gaps:212/2018 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQI---SSDGKL 96
            |.:||:||.||.:|::|||::|..|||...|:|.||:.|.        .:|..:.:   .|:|.:
  Fly    28 DLQGPIFLHEPPHRVEFSNNSGGLIECSGHGSPPPEVEWT--------PIPPQQDMVFQLSNGSM 84

  Fly    97 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVSQHYEEDIHKAFVIRGNSAILKCD 161
            :|.||.||.||.||||.||.|..||..|:::||:||||.||:|.|...:|..:|:.||:|:|||.
  Fly    85 MFYPFTAEKYRHEVHATVYRCKLRNLVGTVLSREVHVRGVVNQKYAVQVHDEYVMTGNTAVLKCQ 149

  Fly   162 IPSFVADFVNVISWHSDEKENFYPGTEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 226
            :||::::||.|.:|..|...:.||.|:..|||.||.:|||:|...||.|.||||.|||.:|||||
  Fly   150 VPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGE 214

  Fly   227 TRLSATKGRLVITEPVGSVSPQLSGNGNQEHITLTRVPKMGSVTLMCPAQAYPVPFFRWYKFIEG 291
            .::|...||:::|||.|.|.|::    |.|..::..|...|..||.|.||.:|||.:||:|  |.
  Fly   215 VQISTYPGRIIVTEPKGMVQPRI----NVEKHSMRHVVLNGQTTLPCIAQGHPVPTYRWFK--EE 273

  Fly   292 TTRKQAVVLNDRVKQVS-GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT 355
            ..:...:.|::|:..|| |.|.|..|.:||||||||.|||:.|.|:::..|||||||:|.:.|..
  Fly   274 NEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQVSLTVTAPLTAHLQPQV 338

  Fly   356 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------PVLRIESVKKEDKGMYQCFVR 412
            ||||..:.|.|.|..:|:|:..|:|:.|||.|....        |.|.|:.|:|||.|||||||.
  Fly   339 QTVDVDKDAQFQCIVSGHPVHDVNWLHDGKPILRDNRVEILTDPPRLIIKKVQKEDPGMYQCFVS 403

  Fly   413 NDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 477
            |:.|..:::|||:||..  .|.:...|.|:|::|||:|.|||||.|||.|:.:|.|||..|.::.
  Fly   404 NEWEQIQSTAELQLGDA--SPELLYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDGFPIPDSS 466

  Fly   478 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIV 542
            |:.||||||::.||:|::||::|...|||.|.|.|::.:|...||||:|:|||||||:|.|...:
  Fly   467 RFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVNIYGLPYIREMPKITGI 531

  Fly   543 AGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG 607
            :|..|||.|||||||||.|.||||.:.|||||:|:.:.|||||||.::|..|..||||:|:|::.
  Fly   532 SGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQRAYNNGTLIIEQLQRLEDAGTYTCMAQNKQK 596

  Fly   608 YSARGSLEVQVMVLPQIVPF-AYEDLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQ 671
            .::|.::|:||:|.|:|:|. |..:::..|....:.|||.:||.|:...|  ||:.        :
  Fly   597 QTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSFRW--ERNG--------K 651

  Fly   672 PQMRT-----NRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDK 731
            |.:.|     .|:.|.::.:.|...|..|:|..||||||.|||..::|.|||||||:|||||.|.
  Fly   652 PLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTERFTVPLTVNVPPKWILEPKDS 716

  Fly   732 AFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV-EEGTLHVDNIQKTNEGYY 795
            :...|:|..:.|::.|:|.|.:|||||:|.|||||||......::: ..||:....|.|.::|::
  Fly   717 SAQAGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDFLYEPTVQLFPNGTIFFKKISKESQGHF 781

  Fly   796 LCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNM--NNMR 858
            ||||.|.||||:|.||.:.|..|..|..|.:..:..:|:...:||..:|:.||...|.:  ....
  Fly   782 LCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKGKQVHVQCNVQGDNPIDFKWKIQATQQY 846

  Fly   859 LDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYA 923
            ||...|:|||||:::|..|::|.|.|..|.|.|:.::.|.|:||||.|:.||.:|||||||.|..
  Fly   847 LDESLDSRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKN 911

  Fly   924 LKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASWSEIDRVIVPGHTTEAQVQKLSPATTY 988
            |::..:..||:||:|:||:.||||::.|.|.:|:....|...:.:.:.|..|...:|:|.||..|
  Fly   912 LRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDIWQNAEHLTIAGAQTVINIQQLRPAKAY 976

  Fly   989 NIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYY 1053
            :||:.|||.:|.|:.||.|.:.|.||.|||.|..::.||.:.|.:.|||..|.|..|||.:||||
  Fly   977 HIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYY 1041

  Fly  1054 VGYKLS--------NTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSE 1110
            |||::|        |....:.|:|:...:..|.|  ..|.||..:|||.|::||:...|:||.|:
  Fly  1042 VGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGE--TVLANLNKFTQYHVIVQAYTSQGSGPPSK 1104

  Fly  1111 EEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRHY 1175
            |....|.|..||.||....|..|.|.:|.:.|..|.::..||.||.|||.|...||.| ||....
  Fly  1105 EIAVQTMEDVPSSPPESPQCDVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELY-ETDPEV 1168

  Fly  1176 KKTASSDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILV 1240
            .|:.:....:..|:||||||:.|||.|..|||:::.|.:|:|..|||.||..:||:...::.|::
  Fly  1169 VKSTNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTKPFYCRTHEDVPSAPQAIKAIPASSSKIII 1233

  Fly  1241 SWRPPAQPNGIITQYTVY-SKAEGAETETKTQKV--PHYQMSFEATELEKNKPYEFWVTASTTIG 1302
            ||.||..|||.||.||.| |..||...|...:::  |..:| .|....:::..|:||:||||.:|
  Fly  1234 SWLPPDLPNGDITGYTFYMSMLEGGREEGTHKRLLGPFVEM-HETVRTQESATYQFWLTASTKMG 1297

  Fly  1303 EGQQSKSIVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITWKIKGVEFSANDRMR 1367
            ||::::.:...|:::|||:|.||.......:||..::||..||||.|...|:..|.....:.|..
  Fly  1298 EGEKTQVVTVPPNNKVPARIVSFSQRIVTPWKEHLELPCRKVGAPAPVTIWRQDGHNMETSARKT 1362

  Fly  1368 VLPDGSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLKPH 1432
            :..:|:|.:|.....|||:|:|..||:..||.|.:.::|..||::|::|:....||:|.::...:
  Fly  1363 IAKNGTLYMKECQASDAGNYTCSVENTWGKDEIVYNIVVKVPPEAPNLTVINAYTDSLLLEWMDN 1427

  Fly  1433 EGDTAPLHGYTLHYKPEFGEWETSEVSVDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNT 1497
            ....:|:.||.::||.:.|:||..:|...:..|.:..|.||:|||:|.|.:|.||.|...||:|:
  Fly  1428 SHGGSPILGYVINYKRDNGDWEELQVDSKTTSHLLTNLWCGTRYQLYITAYNKIGTGLPCDIVNS 1492

  Fly  1498 RTKGQKPKLPEKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVKP-DNN 1561
            .|||..|..|:..:.|..:|.||:....:|.||||.:.:|::||:...:..|..:||::.| :..
  Fly  1493 YTKGNPPVQPKHSQMITNNSTSVTCWLDSWGDGGCGILYFMIESRVYGRSSWAVVSNHIPPTERI 1557

  Fly  1562 YVVLDLEPATWYNLRITAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVH-TRIRLPAWMP 1625
            |.|.||.|.|.|.|::||||:||.|.|.|:|.||: |.|.|        :.|.| |.:...:.:|
  Fly  1558 YTVSDLVPGTKYQLKVTAHNNAGSTTAIYNFTTLS-TQGVI--------YNNDHSTPVSHLSDLP 1613

  Fly  1626 EWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTMGPGATLDKRRP 1690
            .:.:...::|:..:::::...|........|:.|...|          :.:.:|....:|...:.
  Fly  1614 FYANFKLLLPICFSLLMLLALIGAALFLRKRKLASQAR----------LASSSMSESPSLANLQN 1668

  Fly  1691 DLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGRGGLRSNHSTWDPR-RNPNLYEELKAPPVPMH 1754
            ....:..|:|                          :|.|..|..|| .|.|            .
  Fly  1669 KQNRDQQYLA--------------------------VRCNPGTSAPRGSNSN------------D 1695

  Fly  1755 GNHYGHAHGNAECHYRHPGMEDEICPYATFHLLGFREEMDPTKAMNFQTFPHQ----NGHAGPVP 1815
            ...:|.|.||...        ::|||||||.|             |.||:...    |.::||..
  Fly  1696 SGSFGKAEGNEYI--------EDICPYATFQL-------------NKQTYSESSYSGNVYSGPYH 1739

  Fly  1816 GHAGTMLPPGH---PGHVHSRSGSQSMPRANRYQRK-------NSQGGQS--------------S 1856
            ...|:.:  .|   |...||:.     |...:.:||       :|:..:|              :
  Fly  1740 SVRGSFV--YHDVKPESYHSKE-----PEYTKVRRKVGRLRDPHSESQESDNPGSTDSEVRKILT 1797

  Fly  1857 IYTPAPEYDDPANCAEED---------QYR--RYTRVNSQGGSLYSGPGPEYDDPANCAPEEDQY 1910
            ::.|..|||...:.::.|         :||  |.|:..:...|       |....:.....:..:
  Fly  1798 LHIPITEYDTLGSESDNDVSARALNSAKYRAQRDTQDETSSSS-------ETTPTSMTRKSKPPF 1855

  Fly  1911 GSQYGGPYGQPYDHYGSRGSMGRRSIGSARNPGNGSPEPP------PPPPRNHDMSNSSFNDSKE 1969
            .::.|   |:|       |:.|:|.:.|:....:.:.|..      ||..::|....:.|:|:.:
  Fly  1856 AARKG---GKP-------GTSGKRHVRSSSGYSSHNEETTFSISNYPPNYQDHINPPARFSDAND 1910

  Fly  1970 SNE 1972
            ..:
  Fly  1911 KTK 1913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 40/94 (43%)
IG 57..133 CDD:214652 31/78 (40%)
IG_like 267..343 CDD:214653 35/76 (46%)
Ig 269..340 CDD:143165 33/71 (46%)
IG_like 353..425 CDD:214653 34/79 (43%)
IGc2 361..413 CDD:197706 25/59 (42%)
I-set 433..527 CDD:254352 46/93 (49%)
IGc2 446..517 CDD:197706 37/70 (53%)
I-set 533..618 CDD:254352 45/84 (54%)
IGc2 544..607 CDD:197706 39/62 (63%)
Ig 641..714 CDD:143165 26/77 (34%)
IGc2 735..804 CDD:197706 29/69 (42%)
I-set 819..914 CDD:254352 34/96 (35%)
Ig 833..921 CDD:299845 39/89 (44%)
FN3 918..1011 CDD:238020 36/92 (39%)
FN3 1018..1116 CDD:238020 40/105 (38%)
FN3 1124..1217 CDD:238020 38/92 (41%)
FN3 1222..1312 CDD:238020 35/92 (38%)
Ig 1339..1406 CDD:299845 23/66 (35%)
FN3 1409..1499 CDD:238020 32/89 (36%)
FN3 1504..1584 CDD:238020 30/80 (38%)
Dscam_C 1890..2008 CDD:289151 14/89 (16%)
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 45/100 (45%)
Ig strand A 32..35 CDD:409353 1/2 (50%)
Ig strand A' 41..45 CDD:409353 1/3 (33%)
Ig strand B 48..57 CDD:409353 4/8 (50%)
Ig strand D 75..78 CDD:409353 0/2 (0%)
Ig strand E 83..88 CDD:409353 1/4 (25%)
Ig strand F 101..109 CDD:409353 3/7 (43%)
Ig strand G 112..124 CDD:409353 7/11 (64%)
Ig 235..326 CDD:416386 39/96 (41%)
Ig strand A 235..238 CDD:409353 1/6 (17%)
Ig strand A' 244..248 CDD:409353 0/3 (0%)
Ig strand B 251..258 CDD:409353 3/6 (50%)
Ig strand C 266..271 CDD:409353 2/4 (50%)
Ig strand C' 276..279 CDD:409353 0/2 (0%)
Ig strand D 285..289 CDD:409353 1/3 (33%)
Ig strand E 292..298 CDD:409353 3/5 (60%)
Ig strand F 305..313 CDD:409353 6/7 (86%)
Ig strand G 316..326 CDD:409353 3/9 (33%)
IgC2_3_Dscam 329..417 CDD:409549 38/87 (44%)
Ig strand B 347..351 CDD:409549 2/3 (67%)
Ig strand C 360..364 CDD:409549 1/3 (33%)
Ig strand E 383..387 CDD:409549 2/3 (67%)
Ig strand F 397..402 CDD:409549 4/4 (100%)
Ig strand G 410..413 CDD:409549 0/2 (0%)
IgI_4_Dscam 422..516 CDD:409548 46/93 (49%)
Ig strand B 439..443 CDD:409548 2/3 (67%)
Ig strand C 452..456 CDD:409548 0/3 (0%)
Ig strand E 482..486 CDD:409548 1/3 (33%)
Ig strand F 496..501 CDD:409548 2/4 (50%)
Ig strand G 509..512 CDD:409548 1/2 (50%)
IgI_5_Dscam 520..607 CDD:409550 47/86 (55%)
Ig strand B 536..540 CDD:409550 3/3 (100%)
Ig strand C 549..553 CDD:409550 1/3 (33%)
Ig strand E 571..575 CDD:409550 3/3 (100%)
Ig strand F 586..591 CDD:409550 4/4 (100%)
Ig strand G 600..603 CDD:409550 1/2 (50%)
Ig 610..703 CDD:416386 33/102 (32%)
Ig strand A 611..613 CDD:409353 1/1 (100%)
Ig strand A' 620..624 CDD:409353 0/3 (0%)
Ig strand B 627..636 CDD:409353 2/8 (25%)
Ig strand C 641..648 CDD:409353 2/8 (25%)
Ig strand C' 650..652 CDD:409353 0/9 (0%)
Ig strand D 659..664 CDD:409353 0/4 (0%)
Ig strand E 668..675 CDD:409353 1/6 (17%)
Ig strand F 682..690 CDD:409353 5/7 (71%)
Ig strand G 693..702 CDD:409353 3/8 (38%)
IgI_7_Dscam 706..801 CDD:409546 44/94 (47%)
Ig strand B 724..728 CDD:409546 0/3 (0%)
Ig strand C 737..741 CDD:409546 1/3 (33%)
Ig strand E 766..770 CDD:409546 2/3 (67%)
Ig strand F 780..785 CDD:409546 2/4 (50%)
Ig strand G 794..797 CDD:409546 1/2 (50%)
Ig 818..904 CDD:416386 34/85 (40%)
putative Ig strand B 820..827 CDD:409353 1/6 (17%)
putative Ig strand C 835..841 CDD:409353 1/5 (20%)
putative Ig strand C' 853..856 CDD:409353 1/2 (50%)
putative Ig strand D 862..866 CDD:409353 1/3 (33%)
putative Ig strand E 868..874 CDD:409353 3/5 (60%)
putative Ig strand F 881..889 CDD:409353 2/7 (29%)
putative Ig strand G 892..902 CDD:409353 4/9 (44%)
FN3 906..999 CDD:238020 36/92 (39%)
FN3 1006..1110 CDD:238020 40/105 (38%)
fn3 1117..1203 CDD:394996 36/86 (42%)
FN3 1215..1307 CDD:238020 35/92 (38%)
Ig <1334..1401 CDD:416386 23/66 (35%)
Ig strand C 1345..1349 CDD:409353 0/3 (0%)
Ig strand D 1363..1366 CDD:409353 0/2 (0%)
Ig strand E 1367..1372 CDD:409353 2/4 (50%)
Ig strand F 1380..1388 CDD:409353 3/7 (43%)
Ig strand G 1394..1401 CDD:409353 1/6 (17%)
FN3 1405..1494 CDD:238020 31/88 (35%)
FN3 1499..1580 CDD:238020 30/80 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4915
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 917 1.000 Inparanoid score I353
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6394
orthoMCL 1 0.900 - - OOG6_101656
Panther 1 1.100 - - P PTHR10075
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1391
98.870

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