DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and Ncam1

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_038936733.1 Gene:Ncam1 / 24586 RGDID:67378 Length:1136 Species:Rattus norvegicus


Alignment Length:1451 Identity:285/1451 - (19%)
Similarity:469/1451 - (32%) Gaps:491/1451 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 FYPGTEYDGKYLVLPS-GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVS 246
            |:.||....:..::|| ||:.:.|      .|.:.|                             
  Rat    12 FFLGTAVSLQVDIVPSQGEISVGE------SKFFLC----------------------------- 41

  Fly   247 PQLSGNGNQEHITLTRVPKMGSVTLMCPAQAYPVPFFRWY----KFIEGTTRKQAVVLNDRVKQV 307
             |::|:...:.|:                         |:    :.:....::.:||.||   ..
  Rat    42 -QVAGDAKDKDIS-------------------------WFSPNGEKLSPNQQRISVVWND---DD 77

  Fly   308 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV-LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 371
            |.||.|.:|.::|:|.|.|||....|.:|..|| :.:...|..|..|..|....|..||..|...
  Rat    78 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVV 142

  Fly   372 GNPIKTVSW---------MKDGKAIGHSEPVLRIESVKKEDKGMYQC----FVRNDQESAEASAE 423
            .:...|:.|         .||.:.|..|...|:|..:||.|:|.|:|    ..|.:....:....
  Rat   143 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 207

  Fly   424 LKLGGRFDPPVI--RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 486
            :.:     ||.:  ||:....|...|.||.|.|.|.|.|.|.:||..||:.|.|.:.   .....
  Rat   208 VNV-----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE---DDEKH 264

  Fly   487 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKK-AIVAGETLIVT 550
            :..|..|.|.|.:|..||...|.|||::|.|..:.|..|.|:..|.|..:|.: |:...|.:.:|
  Rat   265 IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLT 329

  Fly   551 CPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLE 615
            |..:|.||.||.|....|                   |:. :.::|::|...|.           
  Rat   330 CEASGDPIPSITWRTSTR-------------------NIS-SEEKASWTRPEKQ----------- 363

  Fly   616 VQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRIS 680
                                 :::|       |...::.|                         
  Rat   364 ---------------------ETLD-------GHMVVRSH------------------------- 375

  Fly   681 EKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKA 745
            .:.|.:::.|......|...|.|||..|..:.|:.|.|...|: :..|......:|:...:.|:.
  Rat   376 ARVSSLTLKSIQYTDAGEYICTASNTIGQDSQSMYLEVQYAPK-LQGPVAVYTWEGNQVNITCEV 439

  Fly   746 DGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV----EEGTLHVDNIQKTNEGYYLCEAINGIGSG 806
            ..:|...::|.:     .|:........||::    ....|.|....:.:.|.|.|.|:|.||..
  Rat   440 FAYPSATISWFR-----DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE 499

  Fly   807 LSAVIMISVQAPP----------------EFTEKLRNQTARRGEPAVLQCEAK----GEKPIGIL 851
            ....|::....|.                :|.|    ..|..|.| :|:.:|:    ||:.....
  Rat   500 SLEFILVQADTPSSPSIDRVEPYSSTAQVQFDE----PEATGGVP-ILKYKAEWKSLGEEAWHSK 559

  Fly   852 W------NMNN----MRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSD 906
            |      ||..    |.|.|  :.||.:|        :::|:.|                ..|..
  Rat   560 WYDAKEANMEGIVTIMGLKP--ETRYAVR--------LAALNGK----------------GLGEI 598

  Fly   907 DASINMIVQEV--------PEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRAS-W 962
            .|:.....|.|        |..|.....:.:.|.|::::..:..||.||:..|:::::...|| |
  Rat   599 SAATEFKTQPVHSPPPQGEPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVKYRAKLASEW 663

  Fly   963 SEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEP 1027
            .  ..:.:|..:....::.|.....|.:.:||||..|.|:::..|...:|:  |:..|.|     
  Rat   664 K--PEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTSAQ--PTAIPAN----- 719

  Fly  1028 VNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVY-- 1090
                      ..|......|.|:|..:          .:|..:           |.:.::..|  
  Rat   720 ----------GSPTAGLSTGAIVGILI----------VIFVLL-----------LVVMDITCYFL 753

  Fly  1091 ----TQYSVVIQAFNKIGAG--------------------PL----SEEEKQFTAEGTPSQPPSD 1127
                ....:.:....|.|.|                    |:    :|||:....:|.....|::
  Rat   754 NKCGLLMCIAVNLCGKAGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEEERTPNHDGGKHTEPNE 818

  Fly  1128 TACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRHYKKTASSDTVLHGLKKYT 1192
            |  |.||         .|.|               |:|           .||:.:.:|       
  Rat   819 T--TPLT---------EPEL---------------PAD-----------TTATVEDML------- 839

  Fly  1193 NYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPA----QPNGIIT 1253
               ..|...|...|.:      .:|......:||.....:..:.|      |||    :.|.:..
  Rat   840 ---PSVTTVTTNSDTI------TETFATAQNSPTSETTTLTSSIA------PPATTVPESNSVPA 889

  Fly  1254 QYTVYSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQV 1318
            .....||...|.:.:....||......:.::...:.|....::::....:|       |:.|...
  Rat   890 GQATPSKGVTASSSSPPASVPKVAPLVDLSDTPTSAPSANNLSSTVLANQG-------AVLSPST 947

  Fly  1319 PAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITWKIKGVEFSANDRMRVLPDGSLLIKSVNRQD 1383
            ||...           |.:|:|..:..:|.|..|                 |.|:          
  Rat   948 PASAG-----------ETSKVPATSKPSPTPTPT-----------------PAGA---------- 974

  Fly  1384 AGDYSCHAENSIAKDSITHKLIVLAPP--QSPHVTLSATTTDAL--------TVKLKPHEGDTAP 1438
                             ...|..:|.|  ::|.....|.:|..|        ||| .|.|..|||
  Rat   975 -----------------ASPLAAVAAPATEAPQAKQEAPSTKGLDPEPTQPGTVK-NPTEAATAP 1021

  Fly  1439 L---------------HGYTLHYKPEFGEWETSEVSVDSQKHNIEGLLCGSRYQVYATGFNNIGA 1488
            .               .|..|  |.:.|.::|.:  :|..|.....|  ||  ...|||    .:
  Rat  1022 ASPKSKAPSVSTTNPSQGEDL--KMDEGNFKTPD--IDLAKDVFAAL--GS--PAPATG----AS 1074

  Fly  1489 GEASDILNTRTKGQKPKLPEK 1509
            |:||::..:......|..|.|
  Rat  1075 GQASELAPSTADSAVPPAPAK 1095

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653 20/80 (25%)
Ig 269..340 CDD:143165 18/74 (24%)
IG_like 353..425 CDD:214653 21/84 (25%)
IGc2 361..413 CDD:197706 18/64 (28%)
I-set 433..527 CDD:254352 34/95 (36%)
IGc2 446..517 CDD:197706 27/70 (39%)
I-set 533..618 CDD:254352 17/85 (20%)
IGc2 544..607 CDD:197706 14/62 (23%)
Ig 641..714 CDD:143165 10/72 (14%)
IGc2 735..804 CDD:197706 14/72 (19%)
I-set 819..914 CDD:254352 22/124 (18%)
Ig 833..921 CDD:299845 22/109 (20%)
FN3 918..1011 CDD:238020 22/93 (24%)
FN3 1018..1116 CDD:238020 16/127 (13%)
FN3 1124..1217 CDD:238020 15/92 (16%)
FN3 1222..1312 CDD:238020 14/93 (15%)
Ig 1339..1406 CDD:299845 7/66 (11%)
FN3 1409..1499 CDD:238020 29/114 (25%)
FN3 1504..1584 CDD:238020 3/6 (50%)
Dscam_C 1890..2008 CDD:289151
Ncam1XP_038936733.1 IgI_1_NCAM-1 20..116 CDD:409451 30/159 (19%)
Ig strand B 37..41 CDD:409451 1/3 (33%)
Ig strand C 51..55 CDD:409451 1/28 (4%)
Ig strand E 79..83 CDD:409451 2/3 (67%)
Ig strand F 93..98 CDD:409451 2/4 (50%)
Ig strand G 107..110 CDD:409451 0/2 (0%)
IG_like 124..190 CDD:214653 19/65 (29%)
Ig strand B 135..139 CDD:409353 2/3 (67%)
Ig strand C 148..152 CDD:409353 1/3 (33%)
Ig strand E 172..176 CDD:409353 1/3 (33%)
Ig strand F 186..191 CDD:409353 2/4 (50%)
IgI_3_NCAM-1 211..308 CDD:143207 36/99 (36%)
Ig strand B 231..235 CDD:143207 2/3 (67%)
Ig strand C 244..248 CDD:143207 1/3 (33%)
Ig strand E 271..275 CDD:143207 2/3 (67%)
Ig strand F 285..290 CDD:143207 2/4 (50%)
Ig strand G 298..301 CDD:143207 0/2 (0%)
IgI_NCAM-1 307..413 CDD:143277 31/189 (16%)
Ig strand B 326..330 CDD:143277 0/3 (0%)
Ig strand C 339..343 CDD:143277 2/3 (67%)
Ig strand E 379..383 CDD:143277 1/3 (33%)
Ig strand F 393..398 CDD:143277 1/4 (25%)
Ig strand G 406..409 CDD:143277 0/2 (0%)
Ig_3 422..494 CDD:404760 14/76 (18%)
Ig strand B 433..437 CDD:409353 0/3 (0%)
Ig strand C 446..450 CDD:409353 0/3 (0%)
Ig strand E 473..477 CDD:409353 1/3 (33%)
Ig strand F 487..492 CDD:409353 2/4 (50%)
FN3 509..606 CDD:238020 23/127 (18%)
fn3 619..701 CDD:394996 19/83 (23%)
Herpes_BLLF1 <842..1133 CDD:282904 64/341 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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