DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and Ptpru

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_011248512.1 Gene:Ptpru / 19273 MGIID:1321151 Length:1473 Species:Mus musculus


Alignment Length:1316 Identity:260/1316 - (19%)
Similarity:455/1316 - (34%) Gaps:372/1316 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   643 CQIQKGDRPIKVHWSFERSA-GDYGFDQVQ--PQMRTNRISEKTSMISIPSASPAHTGRDTCIAS 704
            |..::...|: |...|.::. .|:.::||:  |..||.......:.:.:.::..|...|...|..
Mouse    35 CTFEEASDPV-VPCEFSQAQYDDFQWEQVRIHPGTRTPEDLPHGAYLMVNASQHAPGQRAHIIFQ 98

  Fly   705 NKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW-------------K 756
            ..:...|:.|..:      :.|...| ..:.|: ..|..:.:|.|.....|             :
Mouse    99 TLSENDTHCVQFS------YFLYSRD-GHSPGT-LGVYVRVNGGPLGSAVWNMTGSHGRQWHQAE 155

  Fly   757 KAVGD-TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQA--P 818
            .||.. .|.||:.|.::             .|...::||.          ||..:::.|...  .
Mouse   156 LAVSTFWPNEYQVLFEA-------------LISPDHKGYI----------GLDDILLFSYPCAKA 197

  Fly   819 PEFTEKLRNQTARRGEPAVLQCEAKG----------EKPIGILWNMNNMRLDPKNDNRYTIREEI 873
            |.|: :|.:.....|:.|..||.|.|          ::..|:        |.|....|:......
Mouse   198 PHFS-RLGDVEVNAGQNASFQCMAAGRAAEAEHFFLQRQSGV--------LVPAAGVRHISHRRF 253

  Fly   874 LSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRS---VQ 935
            |:|..::|:.     ||:..|:.||:....|:..::...::.:.|..|.|...|.::|.:   :|
Mouse   254 LATFPLASVG-----RSEQDLYRCVSQAPRGAGVSNFAELIVKEPPTPIAPPQLLRAGPTYLIIQ 313

  Fly   936 LSWAQPYDGNSPLDRYIIEFKRSRASWSEIDRVIVPGHTTEAQVQK---LSPATTYNIRIVAENA 997
            |: .....|:.|:.|..||::.:|..|:|:       |....|..|   |.|.|.|.|.::....
Mouse   314 LN-TNSIIGDGPIVRKEIEYRMARGPWAEV-------HAVNLQTYKLWHLDPDTEYEISVLLTRP 370

  Fly   998 --IGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYV------ 1054
              .||.:....:...|....|:..|:.:....:....:.:.|:|          |||.|      
Mouse   371 GDGGTGRPGPPLISRTKCAEPTRAPKGLAFAEIQARQLTLQWEP----------LGYNVTRCHTY 425

  Fly  1055 ------GYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEK 1113
                  .|.|..:::..:.|.:..  |.|.. ...::||..:....|.:...|..|    .:|.|
Mouse   426 AVSLCYRYTLGGSHNQTIRECVKM--ERGAS-RYTIKNLLPFRNIHVRLILTNPEG----RKEGK 483

  Fly  1114 QFTAEGTPSQPPSDTACTTLT----SQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDET--- 1171
            :.|.: |....|...|..:||    ...|.:.|..|  :..||:|..|::.| .|.|..|..   
Mouse   484 EVTFQ-TDEDVPGGIAAESLTFTPLEDMIFLKWEEP--QEPNGLITQYEISY-QSIESSDPAVNV 544

  Fly  1172 ---KRHYKKTASSD-TVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVKA-- 1230
               :|...|..:.. .|...|...|.|...|.|.|:.|.|          :..:.|..|::.|  
Mouse   545 PGPRRTISKLRNETYHVFSNLHPGTTYLFSVRARTSKGFG----------QAALTEITTNISAPS 599

  Fly  1231 ---------LVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAETETKTQKVPHYQ------MSF 1280
                     |......|.|..| |||..|  ...:||......|...:.::.|..|      ::|
Mouse   600 FDYADMPSPLGESENTITVLLR-PAQGRG--APISVYQVVVEEERPRRLRREPGAQDCFSVPLTF 661

  Fly  1281 EATELEKNKPYEFW--VTAST-------TIGEGQQSKSIVAMPSDQVPAKIASFDDTFTATFKED 1336
            | |.|.:...:.|.  :.||:       |:|:.|..:.....|.:...|.:..|.  ..:..|.:
Mouse   662 E-TALARGLVHYFGAELAASSLLEAMPFTVGDNQTYRGFWNPPLEPRKAYLIYFQ--AASHLKGE 723

  Fly  1337 AKMPCLAVG-------APQP-EITWK------IKGVEFSANDRMRVLPDGSLLIKSVNRQDAGDY 1387
            .::.|:.:.       :.:| |::.:      |.|: .:....:.:|..|::::.....:|...|
Mouse   724 TRLNCIRIARKAACKESKRPLEVSQRSEEMGLILGI-CAGGLAVLILLLGAIIVIIRKGRDRYAY 787

  Fly  1388 SCHAEN-SIAKDSITHKLIVLAPPQSPHV--TLSATTTDALTVKLKPHEGDT---APLHGYTLHY 1446
            |.:.:. ::.|.::.::      .:..|:  .:..:.||..|::.....|.:   ||      .|
Mouse   788 SYYPKPVNMTKATVNYR------QEKTHMMSAVDRSFTDQSTLQEDERLGLSFMDAP------GY 840

  Fly  1447 KPEFGEWETSEVSVDSQKHNIEGLL-------CGSRYQVYATGFNNIGAGEASDILNTRTKGQKP 1504
            .|. |:..:..|:..|      .||       ||.:...|.||..: .|...:|:|.   ...:.
Mouse   841 SPR-GDQRSGGVTEAS------SLLGGSPRRPCGRKGSPYHTGQLH-PAVRVADLLQ---HINQM 894

  Fly  1505 KLPEKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVESKKRDQIEWNQ---IS----NNVK----- 1557
            |..|...|    .......|:.|.           .:||:|:::..:   :|    ::||     
Mouse   895 KTAEGYGF----KQEYESFFEGWD-----------ATKKKDKLKGGRQEPVSAYDRHHVKLHPML 944

  Fly  1558 --PDNNYVVLDLEPATWYNLRITAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRL 1620
              ||.:|:     .|.:.::||   |..|:..:.:..|    |.|.:|.....|........:..
Mouse   945 ADPDADYI-----SANYIDIRI---NRQGYHRSNHFIA----TQGDLAQGQAPSAPPGPKPEMIY 997

  Fly  1621 PAWMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDV----VYNQTMGP 1681
            ..|...|.:      ..|::|::...:.|..|..||...:|     .|:|.|:    |..:|:..
Mouse   998 DFWRMVWQE------QCASIVMITKLVEVGRVKCSRYWPED-----SDMYGDIKITLVKTETLAE 1051

  Fly  1682 GA----TLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGRGGLRSNHST-WDPRRNPN 1741
            ..    .|::|        ||.|                       |..:|..|.| |       
Mouse  1052 YVVRTFALERR--------GYSA-----------------------RHEVRQFHFTAW------- 1078

  Fly  1742 LYEELKAPPVPMHGNHYGHAHGNAECHYRHPGMEDEICPYATFHLLGFREEMDPTKAMNFQTFPH 1806
                      |.||..| ||.|                      ||.|      .:.:...|.| 
Mouse  1079 ----------PEHGVPY-HATG----------------------LLAF------IRRVKASTPP- 1103

  Fly  1807 QNGHAGPVPGH--AGT 1820
               .|||:..|  |||
Mouse  1104 ---DAGPIVIHCSAGT 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165 14/73 (19%)
IGc2 735..804 CDD:197706 14/82 (17%)
I-set 819..914 CDD:254352 22/104 (21%)
Ig 833..921 CDD:299845 20/97 (21%)
FN3 918..1011 CDD:238020 25/100 (25%)
FN3 1018..1116 CDD:238020 19/109 (17%)
FN3 1124..1217 CDD:238020 26/103 (25%)
FN3 1222..1312 CDD:238020 26/115 (23%)
Ig 1339..1406 CDD:299845 11/81 (14%)
FN3 1409..1499 CDD:238020 22/101 (22%)
FN3 1504..1584 CDD:238020 18/93 (19%)
Dscam_C 1890..2008 CDD:289151
PtpruXP_011248512.1 MAM 31..194 CDD:214533 34/190 (18%)
IG 204..290 CDD:214652 19/98 (19%)
fn3 299..373 CDD:365830 20/81 (25%)
FN3 394..489 CDD:238020 20/112 (18%)
fn3 502..585 CDD:365830 24/95 (25%)
PTP_DSP_cys 951..1174 CDD:391942 54/270 (20%)
R-PTPc-U-2 1259..1465 CDD:350485
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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