DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam1 and igcm-2

DIOPT Version :10

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001362087.1 Gene:igcm-2 / 180913 WormBaseID:WBGene00020130 Length:802 Species:Caenorhabditis elegans


Alignment Length:907 Identity:201/907 - (22%)
Similarity:328/907 - (36%) Gaps:229/907 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   410 FVRNDQESAEASAEL-KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI 473
            |:|...:..|..|.. |.|.....|.....|.||:.                  .:.|..||:.|
 Worm    10 FIRRQTDDGEMKAYWGKAGAPITLPCSISLFNEESF------------------SLDWRKDGQLI 56

  Fly   474 ANNDRYQVGQYV-TVNGDVV--SYLNIT--SVHANDGGLYKCI--------AKSKVGVAEHSAKL 525
            .:....:.|... |:.|.:.  .:|.||  ||...|.|:|:||        .:.:.|:   ||||
 Worm    57 LSAFGQEQGHVTPTLQGRLARDGFLGITIHSVTDGDAGVYQCIVTKFSKQPTRPEKGL---SAKL 118

  Fly   526 NVYGLPYIRQMEKKAIV---AGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIE 587
            .|...|.|....|.||:   .|..||..|...|.|...|.|.|:        :|.:..:..|.:.
 Worm   119 VVNVPPVIISPSKNAIIHKKVGADLIFECKAEGAPSPEITWSRN--------EQIISTSPVLTLS 175

  Fly   588 NVERNSDQATYTCVAKNQEGYSARGSLEVQV--MVLPQIVPFAYEDLINMGDSIDLFCQIQKGDR 650
            |:| ..|:..|||:|.|.||.|. .|::|:.  ..:..::|.  ...:..|.::...|.......
 Worm   176 NLE-EGDKGLYTCLAVNIEGNST-SSIDVRFTKATILDLIPL--NKTVIEGSNVFWHCHANAQAT 236

  Fly   651 PIKVHWSFERSAGDYGFDQVQPQMRTN---RISEKTSMISIPSASPAHTGRDTCIASNKAGTTTY 712
            .|...|.||:          :|...|:   |.:.::..:|:.....:.:|..||.|.|.||.||.
 Worm   237 AISYSWLFEK----------KPIKTTSLGLRSNIRSGDLSLQDVRKSDSGWYTCEAKNSAGETTS 291

  Fly   713 SVD-LTVNVPPRWILEPTD-----KAFAQGSDAKVECKADGFPKP-QVTWKKAVGDTPGEYKDLK 770
            |.. |.|..||    ||..     :..|.|.:..|.|.....|.| ..||.|     .|.|...:
 Worm   292 STAYLHVFYPP----EPLSSHQPVQTVASGRNTTVSCDVIANPTPTSYTWSK-----NGHYLPTQ 347

  Fly   771 KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQ-TARRGE 834
            .|.:|.:...       :..:.|.|.|:|.|..|.|......:.|..||.||....:: ..|.|:
 Worm   348 ASSHIIISYA-------KPGDGGIYGCQADNIAGKGSIVETHLIVAEPPVFTVAPPSEIKVRLGD 405

  Fly   835 PAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVA 899
            ...:.|:..|:....:.|..:..|::                  .|:|:.|:.|..|...:.||.
 Worm   406 QVSIPCQGFGDPMPIVYWIRDKKRIN------------------QSTLTFKKVEHLDHGAYECVV 452

  Fly   900 TNAFGSDDASINMIVQ-EVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRA--- 960
            .|:..:....:.::|: ..|:|..::|....:..|:::||...|:|.         |.::.|   
 Worm   453 ANSVETISTRVMLLVEITKPQMASSIKFTCLNSSSMRISWTPGYNGG---------FDQTFAVHA 508

  Fly   961 ------SWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGK 1019
                  .|:.|...:     .|..:..|.|..:|.:.|.:.||.|::.|:               
 Worm   509 QNDVTLQWTSIKTSL-----NETILDHLEPFVSYRVSIESVNAKGSTNST--------------- 553

  Fly  1020 PQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYK-----LSNTNSSYVFETINFITEEGKE 1079
                            |:.....|..:.....|:.||.     .:...|||..|:   .||..|.
 Worm   554 ----------------TYNRRSCTSLHAPDKLYFCGYNELCWTAAEGASSYRIES---RTEPSKN 599

  Fly  1080 HNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQ--FTAEGT-PSQPPSDTACTTLTSQTIRVG 1141
                      :...:.|::.:.::|..  .:|.||  |....| ||.|||:      .|..:|.|
 Worm   600 ----------FQPLAEVLETYYRLGKD--VDETKQTIFRVRSTRPSYPPSE------PSNALRYG 646

  Fly  1142 W---VSPP---LESANGVIKTYKV-VYAPSDEW---YDETKR-HYKKTASSDTVLHGLKKYTNYT 1195
            .   |..|   |.:..|::..:.. ::|    |   :::.|: ..:|:.|:.|.....:.|..:|
 Worm   647 IADNVDLPIFMLAAVFGLLFCFACGLFA----WRCFHNKNKKSKRRKSRSNSTPSKTYQDYGRFT 707

  Fly  1196 MQVLATTAGGDGVRSVPIHCQT--EPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQY 1255
            .        |||..|.....:|  ||.:        .|:..:     .||.|.....:..:|
 Worm   708 Y--------GDGSSSSQPGTETYYEPSL--------RLLDDH-----EWRGPRDLEPVAVRY 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 IgI_1_Dscam 38..136 CDD:409547
Ig strand A 39..42 CDD:409547
Ig strand A' 48..52 CDD:409547
Ig strand B 55..64 CDD:409547
Ig strand C 70..76 CDD:409547
Ig strand C' 78..81 CDD:409547
Ig strand D 87..90 CDD:409547
Ig strand E 95..100 CDD:409547
Ig strand F 113..121 CDD:409547
Ig strand G 124..136 CDD:409547
IgI_2_Dscam 246..343 CDD:409545
Ig strand A 247..250 CDD:409545
Ig strand A' 260..264 CDD:409545
Ig strand B 267..274 CDD:409545
Ig strand C 282..288 CDD:409545
Ig strand C' 294..297 CDD:409545
Ig strand D 303..307 CDD:409545
Ig strand E 309..315 CDD:409545
Ig strand F 322..330 CDD:409545
Ig strand G 333..343 CDD:409545
IgC2_3_Dscam 346..426 CDD:409549 4/16 (25%)
Ig strand A 347..352 CDD:409549
Ig strand A' 355..359 CDD:409549
Ig strand B 362..372 CDD:409549
Ig strand C 377..383 CDD:409549
Ig strand C' 384..387 CDD:409549
Ig strand E 392..398 CDD:409549
Ig strand F 405..413 CDD:409549 1/2 (50%)
Ig strand G 416..426 CDD:409549 2/10 (20%)
IgI_4_Dscam 432..527 CDD:409548 26/107 (24%)
Ig strand A 432..435 CDD:409548 1/2 (50%)
Ig strand A' 441..445 CDD:409548 2/3 (67%)
Ig strand B 448..457 CDD:409548 0/8 (0%)
Ig strand C 462..468 CDD:409548 1/5 (20%)
Ig strand C' 470..473 CDD:409548 1/2 (50%)
Ig strand D 478..486 CDD:409548 1/8 (13%)
Ig strand E 490..499 CDD:409548 3/12 (25%)
Ig strand F 506..514 CDD:409548 4/15 (27%)
Ig strand G 517..527 CDD:409548 5/9 (56%)
IgI_5_Dscam 531..618 CDD:409550 29/89 (33%)
Ig strand A 531..533 CDD:409550 1/1 (100%)
Ig strand A' 538..542 CDD:409550 2/3 (67%)
Ig strand B 545..552 CDD:409550 2/6 (33%)
Ig strand C 559..565 CDD:409550 2/5 (40%)
Ig strand C' 566..568 CDD:409550 0/1 (0%)
Ig strand D 575..579 CDD:409550 1/3 (33%)
Ig strand E 582..588 CDD:409550 1/5 (20%)
Ig strand F 596..604 CDD:409550 4/7 (57%)
Ig strand G 608..618 CDD:409550 3/9 (33%)
Ig 621..718 CDD:472250 22/100 (22%)
Ig strand B 639..643 CDD:409353 0/3 (0%)
Ig strand C 653..657 CDD:409353 0/3 (0%)
Ig strand E 684..688 CDD:409353 0/3 (0%)
Ig strand F 698..703 CDD:409353 2/4 (50%)
Ig strand G 711..714 CDD:409353 1/2 (50%)
IgI_7_Dscam 721..815 CDD:409546 24/99 (24%)
Ig strand A 721..725 CDD:409546 2/3 (67%)
Ig strand A' 730..734 CDD:409546 0/8 (0%)
Ig strand B 737..746 CDD:409546 2/8 (25%)
Ig strand C 752..758 CDD:409546 2/5 (40%)
Ig strand C' 764..767 CDD:409546 1/2 (50%)
Ig strand D 775..778 CDD:409546 1/2 (50%)
Ig strand E 780..786 CDD:409546 0/5 (0%)
Ig strand F 793..801 CDD:409546 4/7 (57%)
Ig strand G 806..815 CDD:409546 1/8 (13%)
Ig 818..916 CDD:472250 19/99 (19%)
Ig strand B 836..840 CDD:409353 0/3 (0%)
Ig strand C 849..853 CDD:409353 0/3 (0%)
Ig strand E 880..884 CDD:409353 2/3 (67%)
Ig strand F 894..899 CDD:409353 1/4 (25%)
FN3 <899..1212 CDD:442628 66/341 (19%)
Ig strand G 907..910 CDD:409353 0/2 (0%)
FN3 1222..1312 CDD:238020 5/34 (15%)
Ig <1339..1406 CDD:472250
Ig strand C 1350..1354 CDD:409358
Ig strand E 1372..1376 CDD:409358
Ig strand F 1386..1391 CDD:409358
Ig strand G 1399..1402 CDD:409358
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1893..2008 CDD:463546
igcm-2NP_001362087.1 Ig_3 28..101 CDD:464046 22/90 (24%)
Ig 124..200 CDD:472250 27/85 (32%)
Ig strand B 143..147 CDD:409358 2/3 (67%)
Ig strand C 156..160 CDD:409358 1/3 (33%)
Ig strand E 171..174 CDD:409358 1/2 (50%)
Ig strand F 184..189 CDD:409358 3/4 (75%)
Ig strand G 195..198 CDD:409358 1/3 (33%)
IG_like 214..298 CDD:214653 22/95 (23%)
Ig strand C 239..243 CDD:409353 0/3 (0%)
Ig strand E 263..267 CDD:409353 0/3 (0%)
Ig strand F 277..282 CDD:409353 2/4 (50%)
Ig strand G 291..294 CDD:409353 1/2 (50%)
Ig_3 301..371 CDD:464046 21/85 (25%)
Ig_3 388..454 CDD:464046 17/83 (20%)
FN3 476..548 CDD:238020 17/85 (20%)
FN3 <573..>643 CDD:442628 22/90 (24%)
Blue background indicates that the domain is not in the aligned region.

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