DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and Ncam1

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_006510118.1 Gene:Ncam1 / 17967 MGIID:97281 Length:1162 Species:Mus musculus


Alignment Length:1486 Identity:300/1486 - (20%)
Similarity:491/1486 - (33%) Gaps:501/1486 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 FYPGTEYDGKYLVLPS-GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVS 246
            |:.||....:..::|| ||:.:.|      .|.:.|                             
Mouse    12 FFLGTAVSLQVDIVPSQGEISVGE------SKFFLC----------------------------- 41

  Fly   247 PQLSGNGNQEHITLTRVPKMGSVTLMCPAQAYPVPFFRWY----KFIEGTTRKQAVVLNDRVKQV 307
             |::|:...:.|:                         |:    :.:....::.:||.||   ..
Mouse    42 -QVAGDAKDKDIS-------------------------WFSPNGEKLSPNQQRISVVWND---DD 77

  Fly   308 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV-LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 371
            |.||.|.:|.::|:|.|.|||....|.:|..|| :.:...|..|..|..|....|..||..|...
Mouse    78 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVV 142

  Fly   372 GNPIKTVSW---------MKDGKAIGHSEPVLRIESVKKEDKGMYQC----FVRNDQESAEASAE 423
            .:...|:.|         .||.:.|..|...|:|..:||.|:|.|:|    ..|.:....:....
Mouse   143 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 207

  Fly   424 LKLGGRFDPPVI--RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 486
            :.:     ||.:  ||:....|...|.||.|.|.|.|.|.|.:||..||:.|.|.:.   .....
Mouse   208 VNV-----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE---DDEKH 264

  Fly   487 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKK-AIVAGETLIVT 550
            :..|..|.|.|.:|..||...|.|||::|.|..:.|..|.|:..|.|..:|.: |:...|.:.:|
Mouse   265 IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLT 329

  Fly   551 CPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLE 615
            |..:|.||.||.|....|                   |:. :.::|::|...|.           
Mouse   330 CEASGDPIPSITWRTSTR-------------------NIS-SEEKASWTRPEKQ----------- 363

  Fly   616 VQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRIS 680
                                 :::|       |...::.|                         
Mouse   364 ---------------------ETLD-------GHMVVRSH------------------------- 375

  Fly   681 EKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKA 745
            .:.|.:::.|......|...|.|||..|..:.|:.|.|...|: :..|......:|:...:.|:.
Mouse   376 ARVSSLTLKSIQYTDAGEYICTASNTIGQDSQSMYLEVQYAPK-LQGPVAVYTWEGNQVNITCEV 439

  Fly   746 DGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV----EEGTLHVDNIQKTNEGYYLCEAINGIGSG 806
            ..:|...::|.:     .|:........||::    ....|.|....:.:.|.|.|.|:|.||..
Mouse   440 FAYPSATISWFR-----DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE 499

  Fly   807 LSAVIMISVQAPP----------------EFTEKLRNQTARRGEPAVLQCEAK----GEKPIGIL 851
            ....|::....|.                :|.|    ..|..|.| :|:.:|:    ||:.....
Mouse   500 SLEFILVQADTPSSPSIDRVEPYSSTAQVQFDE----PEATGGVP-ILKYKAEWKSLGEESWHFK 559

  Fly   852 W------NMNN----MRLDPKNDNRYTIREEILS---TGVMSSLSIKRTE---------RSDSAL 894
            |      ||..    |.|.|  :.||::|...|:   .|.:|:.:..:|:         .::|:.
Mouse   560 WYDAKEANMEGIVTIMGLKP--ETRYSVRLAALNGKGLGEISAATEFKTQPVHSPPPLAPANSST 622

  Fly   895 FTCVATNA-------FGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYI 952
            ...::..|       ..:.|.|     :..|..|.....:.:.|.|::::..:..||.||:..|:
Mouse   623 LVPLSPRATTWPLPVLPTTDLS-----KGEPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYL 682

  Fly   953 IEFKRSRAS-WSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAP 1016
            ::::...|| |.  ..:.:|..:....::.|.....|.:.:||||..|.|:::..|...:|:  |
Mouse   683 VKYRAKLASEWK--PEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTSAQ--P 743

  Fly  1017 SGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHN 1081
            :..|.|               ..|......|.|:|..:          .:|..:           
Mouse   744 TAIPAN---------------GSPTAGLSTGAIVGILI----------VIFVLL----------- 772

  Fly  1082 LELQNLRVYTQYSVVIQAFNKIG------------AGP------LSEEEKQFTAEGTPSQPPSDT 1128
            |.:.::..|        ..||.|            |||      :.|.:..|:.:          
Mouse   773 LVVMDITCY--------FLNKCGLLMCIAVNLCGKAGPGAKGKDMEEGKAAFSKD---------- 819

  Fly  1129 ACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRHYKKTASSDTVLHGLKKYTN 1193
                               ||...::               |.:...::|.:.|           
Mouse   820 -------------------ESKEPIV---------------EVRTEEERTPNHD----------- 839

  Fly  1194 YTMQVLATTAGGDGVRSVPIHCQTEPD------VPEAPTDVKALVMGNAAILVSWRPPAQPNGII 1252
                      ||.         .|||:      .||.|.|..|.|   ..:|.|          :
Mouse   840 ----------GGK---------HTEPNETTPLTEPELPADTTATV---EDMLPS----------V 872

  Fly  1253 TQYTVYSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMP-SD 1316
            |..|..|     :|.|:|         |...:   |.|     |:.||......:.....:| |:
Mouse   873 TTVTTNS-----DTITET---------FATAQ---NSP-----TSETTTLTSSIAPPATTVPDSN 915

  Fly  1317 QVPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITWKIKGVEFSANDRMRVLPDGSLLIKSVNR 1381
            .|||..|:.....||:....|..|.:   ||..:::........::|....||.:...::.....
Mouse   916 SVPAGQATPSKGVTASSSSPASAPKV---APLVDLSDTPTSAPSASNLSSTVLANQGAVLSPSTP 977

  Fly  1382 QDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDAL--------------------T 1426
            ..||:.|.....|.|..:.|.   ..|...||...::|..|||.                    |
Mouse   978 ASAGETSKAPPASKASPAPTP---TPAGAASPLAAVAAPATDAPQAKQEAPSTKGPDPEPTQPGT 1039

  Fly  1427 VKLKPHEGDTAPL------------HGYTLHYKPEFGEWETSEVSVDSQKHNIEGLLCGSRYQVY 1479
            || .|.|..|||.            .|..|  |.:.|.::|.:  :|..|.....|  ||  ...
Mouse  1040 VK-NPPEAATAPASPKSKAATTNPSQGEDL--KMDEGNFKTPD--IDLAKDVFAAL--GS--PAP 1095

  Fly  1480 ATGFNNIGAGEASDILNT------------------RTKGQKPKLPEKPRFIEVSS 1517
            |||    .:|:||::..:                  .||.:.|:...||...||.:
Mouse  1096 ATG----ASGQASELAPSTADSAVPPAPAKTEKGPVETKSEPPESEAKPAPTEVKT 1147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653 20/80 (25%)
Ig 269..340 CDD:143165 18/74 (24%)
IG_like 353..425 CDD:214653 21/84 (25%)
IGc2 361..413 CDD:197706 18/64 (28%)
I-set 433..527 CDD:254352 34/95 (36%)
IGc2 446..517 CDD:197706 27/70 (39%)
I-set 533..618 CDD:254352 17/85 (20%)
IGc2 544..607 CDD:197706 14/62 (23%)
Ig 641..714 CDD:143165 10/72 (14%)
IGc2 735..804 CDD:197706 14/72 (19%)
I-set 819..914 CDD:254352 26/143 (18%)
Ig 833..921 CDD:299845 24/120 (20%)
FN3 918..1011 CDD:238020 22/93 (24%)
FN3 1018..1116 CDD:238020 16/115 (14%)
FN3 1124..1217 CDD:238020 7/92 (8%)
FN3 1222..1312 CDD:238020 20/89 (22%)
Ig 1339..1406 CDD:299845 12/66 (18%)
FN3 1409..1499 CDD:238020 30/139 (22%)
FN3 1504..1584 CDD:238020 5/14 (36%)
Dscam_C 1890..2008 CDD:289151
Ncam1XP_006510118.1 Ig1_NCAM-1 20..115 CDD:143273 30/158 (19%)
IG 124..190 CDD:214652 19/65 (29%)
Ig3_NCAM-1_like 211..308 CDD:143207 36/99 (36%)
Ig_NCAM-1 307..413 CDD:143277 31/189 (16%)
Ig_3 417..494 CDD:372822 15/82 (18%)
FN3 509..606 CDD:238020 22/103 (21%)
fn3 649..731 CDD:365830 19/83 (23%)
PHA03247 <905..1140 CDD:223021 55/253 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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