DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and rig-4

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:2075 Identity:432/2075 - (20%)
Similarity:735/2075 - (35%) Gaps:549/2075 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 RVKQVSGTLI-------IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ---- 356
            |:...||.||       ::.:.|.|..||.||..|:||               |.|.||:.    
 Worm    64 RIGDASGELIATSKFCEVQASRVNDEKKYRCVARNTVG---------------AAISPPSMVRSK 113

  Fly   357 ----------------TVDFGRPAVF---TCQYTGNPIKTVSWMKDGKAIGH-----------SE 391
                            |...||..|.   |...:.|...:.||:||.   .|           |:
 Worm   114 YLDDFDASDESVQYEVTTGVGRYFVLRRPTLLASRNLDISYSWIKDD---SHQVTPDATHFVTSD 175

  Fly   392 PVLRIESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQ-----------EETME 445
            ..|.:..||::|.|.|:....:|......|.|..:......|.::....           |.|: 
 Worm   176 GNLVVTGVKRDDFGAYKLMASSDDLKEIVSKEYNVRDNGLSPSLQNTLSIVYFPTDRTIIESTL- 239

  Fly   446 PGPSVFLKCVA--GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY 508
            |...:| .||.  |......|.|.|:|::|:.:   :||...|:|...:...|.:|....:..| 
 Worm   240 PHDEIF-DCVTSFGSKDDVRIRWFLNGQQISGS---EVGMTTTLNNRRLIISNPSSFTRGEHKL- 299

  Fly   509 KCIAKSKVGVA--EHSAKLNVYGLPYIRQME---KKAIVAGETLIVTCPVAGYPIDSIVWERDNR 568
            :|.|.:.:|..  :.||.:.....|.::.:.   :|.:  |.:|.:.|.|.......|.|.::..
 Worm   300 ECRADAAMGRTSDQKSAYMTFISRPILKDLPNEIQKTV--GSSLSLKCSVKKKSSMDIKWYKNGL 362

  Fly   569 ALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLI 633
            .:...|       |.|.|:.:::: |...|.|.|.|..|                      .||.
 Worm   363 MMTTQR-------GKLTIDRIKQD-DFGLYQCEATNAAG----------------------ADLA 397

  Fly   634 NMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRIS--EKTSMISIPSASPAHT 696
            ::                    |..|..|.    :.|..:|..:.:|  |:.||.:.|..     
 Worm   398 SV--------------------WVKEGEAN----ETVATEMSEDGMSLEEEISMETPPPR----- 433

  Fly   697 GRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSD-AKVECKADGFPKPQVTWKKAVG 760
             :.....::|:....:.....:....:.|..|.|...|.|:| ..:||.|.|.|.|.:.|.....
 Worm   434 -KLKFFDNSKSQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNIIWLLNGH 497

  Fly   761 DTPGEYKDLKKSDNIRVE---EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFT 822
            :.        ::||::.:   :| |.:.:|:|::||.|.||.   .||.:.|...:.|.......
 Worm   498 EI--------QTDNVKYDLTNDG-LAIHDIRKSDEGEYTCEI---SGSNVKATANVQVNGDSLIE 550

  Fly   823 EKLRNQTARRGEPAVLQCEAKGE--KPIGILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIK 885
            ....:|.:..|......||...|  :...:.|.:|::.| |.|.|. .:|   :|.....||.|:
 Worm   551 YGPADQKSLIGTNVEFSCEVAKEYVRKASVEWYLNDVLL-PVNGNS-GLR---ISRNRKGSLIIR 610

  Fly   886 RTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKV---LDKSGRSVQLSWAQPYDGNSP 947
            :....::..:.|..|.....::||..:.:.|.|.||..::.   .:.....|::.|.:.:|||.|
 Worm   611 QVGPDNTGEYRCRVTVDGREENASAMLQIIEKPAMPERVRAELHNETMPAKVRVRWNEGFDGNEP 675

  Fly   948 LDRYIIEFKRSRAS--WSEIDRVI--VPGHTTE----AQVQKLSPATTYNIRIVAENAIGTSQSS 1004
            :.::.||.:....:  ||:....|  :|....:    ..::.|.|::|...|:||.|..|..:.|
 Worm   676 IIKHAIEMRTMGPTGLWSDWTTAIDNIPKEEGKPCCWTDIEDLRPSSTAEFRVVASNKHGPGKPS 740

  Fly  1005 -EAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFE 1068
             .:.::...::.||..|:|:.....:..::.|.|:.|.....:|::|||.|.|:|:. .||..:.
 Worm   741 LPSYSVTMPQQPPSAAPRNVAASARSPHSVMVQWQQPKEELDSGDVLGYVVRYRLAG-YSSLTWN 804

  Fly  1069 TINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTL 1133
            ..|..|::.:  |..:..|..:.:|.:.:.|:||.|.|..||..:..|:||.|:|.|.:.....|
 Worm   805 EKNLTTKDAR--NTLVDELITWREYEIQVAAYNKRGLGVFSESIEVTTSEGRPTQAPKNVRVKVL 867

  Fly  1134 TSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRH--YKKT------ASSDTVLHGLKK 1190
            .|..:.:.:.:|..:...||...|||.:     |..|.::.  ||:.      ....||::.|:|
 Worm   868 NSTAVAIEFTAPEQQRIPGVNLGYKVQF-----WKGEPEKGELYKQVILDPDRRQLTTVVNELEK 927

  Fly  1191 YTNYTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVK-ALVMGNAAILVSWRPPAQPNGIITQ 1254
            :.:|.:..|..|..|||.||..:...||.|.||:..::. |.||.|.|: ::|..|.:.|||:|:
 Worm   928 FGHYNLTTLCFTTPGDGPRSNVVKVVTEEDTPESVDELSIAEVMYNGAV-ITWNSPLKQNGIVTK 991

  Fly  1255 YTV-YSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEG--QQSKSIVAMPSD 1316
            ||: :..|...:.:|| .:|.....:|....|:.:..|...|.|||..|:|  :::|....:|.:
 Worm   992 YTIRHWAASSPDVKTK-HEVDGSTTNFTIDGLQPSTRYGVDVMASTRKGDGPVEETKFESGVPPE 1055

  Fly  1317 -----------------------------------QVPAKIASFDDTFTATFKEDA-KMPCLAVG 1345
                                               .|..|:|. ...|...|...| |...:.|.
 Worm  1056 LPGRPSMLSIGDISATTVQLHFTPGFDGHTAIRQWVVEGKMAD-SSVFAHVFNVSAPKARSITVT 1119

  Fly  1346 APQPEITWKIKGVEFSANDR------------MRVLPD--------------------GSLLIKS 1378
            ..:|...::::.:..:...|            ::..||                    ..||...
 Worm  1120 GLRPFTQYQLRLIAENVKGRGAPSEPSRSFETLQTNPDTPSQRLFAEPVSATSISVSWTPLLATH 1184

  Fly  1379 VNRQDAG-------------------------------------DYSCHAEN----SIAKDSITH 1402
            .|.|..|                                     :.:..:||    |:..||:..
 Worm  1185 WNGQPKGYLIVYREIDDENWKEVRTPALRSSEHTVTDLRPFTSYEVNVFSENGFGRSLPTDSVKA 1249

  Fly  1403 KLIVLAPPQSP-HVTLSATTTDALTVKLKP-----HEGDTAPLHGYTLHYKPEFGEW---ETSEV 1458
            :.....|..|| ::.::|..:.|..:|..|     ..||..   ||.|...||....   ||..:
 Worm  1250 RTYESVPSGSPRNIVVTAEGSKAAIIKWNPVAELSTNGDVI---GYKLRVVPERESLMADETKVI 1311

  Fly  1459 SVDSQK---HNIEGLLCGSRYQVYATGFNNIGAG-EASDILNTRTKGQKPKLPEKPRFIEVSSNS 1519
            .:..|.   ..:..|...:.|.||.:.:..:|.| |.|..::..|....|..||..:...:|...
 Worm  1312 DIPGQSTLMAKVSDLRPFTSYHVYMSAYTIVGNGPENSTPISFETMEDVPAPPESFQCSYISEQE 1376

  Fly  1520 VSLHFKAWKDGGCP---MSHFVVESKKRDQ-----IEWNQISNNVKPDNNYVVLDLEPATWYNLR 1576
            |.:   .|...|.|   ::::::...|..:     |:...:.|.:.    :..:.|.|.|.|...
 Worm  1377 VRM---KWLPPGSPNGKITNYIISYWKSHEPRSMAIDAPLLGNLLM----FAAMSLNPNTQYTFA 1434

  Fly  1577 ITAHNSAGFTVAEYDFATLTVTGGTI--------APLDDG-SGHGNVHTRIRLPAWMPEWLDLNF 1632
            |.|.||.|    |.:.|...|...::        ||:.|. |.|......||....:|..|..:.
 Worm  1435 IKARNSKG----ESEEAVAEVMTSSVRLPVRNAPAPVRDTLSQHQATEIIIRWDESLPRKLTEDA 1495

  Fly  1633 MVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTMGPGATLDKRRPDLRDELG 1697
            ..|:.|           |.|:..:...|:....:|...|              .|||..::    
 Worm  1496 ESPVRA-----------VQVSYQKTNEDEWITLEKKFEY--------------SKRRSVIK---- 1531

  Fly  1698 YIAPPNRKLPPVPGSNYNTCDRIK-RGRGGLRSNHSTWDP-----RRNPNL-YEE---LKAPP-- 1750
            :::|             |:..|.: |..|...  .|:|.|     |..|:. :.:   |||.|  
 Worm  1532 HLSP-------------NSMFRFRIRFIGDFL--ESSWSPESEWMRTLPSAPFAQPISLKATPYE 1581

  Fly  1751 ---------VPMHGNHYGHAHGNAECHYR-HPGMEDEICPYATFHL--LGFREEMDPTK---AMN 1800
                     ||........|.| ...||| :|..|       |:.:  :..|:|.:..:   ...
 Worm  1582 RNSVQLEWVVPHKSTWNSDAIG-YRIHYREYPSNE-------TWQMEEIAIRDEHEDKEEKILAK 1638

  Fly  1801 FQTFPH------------QNGHAGPVPGHAGTMLPPGHPGHVHSRSGSQSMPRA--NRYQRKNSQ 1851
            ..:|.|            :...:.||..:.|..:|..:..::.:...|.|..|.  :.:.:::|:
 Worm  1639 LDSFKHYILRMRIFNSEGEGPFSAPVFAYVGYSIPKRNLNNIITEPLSSSSIRVKWDAWPKEDSE 1703

  Fly  1852 GGQS--SIYTPAPEYDDPANCAEE-----------DQYRRYTR-------VNSQG---------G 1887
            ...|  ..|.|........:..||           :..|::|.       .|..|         .
 Worm  1704 TITSFKVRYVPVASVLSSVSSEEEIMIVDTNECTLNDLRKFTEYQISVSPYNRAGEGKMSQVRDK 1768

  Fly  1888 SLYSGPGP----------------EYDDPANCAPEEDQYGSQYGGPYGQP--------------Y 1922
            :|...|||                .:|:|:........|...|.|...|.              :
 Worm  1769 TLEDKPGPVGILRFSDVLMDSVKVSWDEPSQPNGNVIGYIVNYKGYRMQEEFKNEDQQRTSRNYF 1833

  Fly  1923 DHYG---------------SRGSMGRRSIGSARNPGNGSPEPPPPPPRNHDMSNSSF-----NDS 1967
            |.:|               |.|...:||......|   |.:.||||.:....|..|:     ||.
 Worm  1834 DTHGLAEGVTYFFSVWAETSAGKGEQRSANVTIGP---SKDGPPPPSKPQITSGQSYVTLNWNDV 1895

  Fly  1968 KESNEI----------SEAECDRDHGPRGNYGAVKRSPQPKDQRTTEEMRKLIERNETGP 2017
            .:|:||          |.||    ..|...|  |.:.|:..:.:..:...:......|.|
 Worm  1896 ADSDEIVGHLLQAKRVSVAE----EAPANGY--VSQRPRRNEIKGAKSAAQTAAATSTRP 1949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653 14/46 (30%)
Ig 269..340 CDD:143165 14/43 (33%)
IG_like 353..425 CDD:214653 23/105 (22%)
IGc2 361..413 CDD:197706 17/65 (26%)
I-set 433..527 CDD:254352 25/108 (23%)
IGc2 446..517 CDD:197706 19/72 (26%)
I-set 533..618 CDD:254352 17/87 (20%)
IGc2 544..607 CDD:197706 15/62 (24%)
Ig 641..714 CDD:143165 11/74 (15%)
IGc2 735..804 CDD:197706 20/72 (28%)
I-set 819..914 CDD:254352 20/96 (21%)
Ig 833..921 CDD:299845 21/89 (24%)
FN3 918..1011 CDD:238020 24/104 (23%)
FN3 1018..1116 CDD:238020 26/97 (27%)
FN3 1124..1217 CDD:238020 25/100 (25%)
FN3 1222..1312 CDD:238020 29/93 (31%)
Ig 1339..1406 CDD:299845 15/139 (11%)
FN3 1409..1499 CDD:238020 25/102 (25%)
FN3 1504..1584 CDD:238020 19/87 (22%)
Dscam_C 1890..2008 CDD:289151 35/177 (20%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 20/123 (16%)
IGc2 338..393 CDD:197706 15/62 (24%)
I-set 459..543 CDD:254352 27/95 (28%)
IGc2 478..534 CDD:197706 19/67 (28%)
IG_like 553..639 CDD:214653 20/90 (22%)
Ig 564..635 CDD:143165 17/75 (23%)
FN3 643..747 CDD:238020 24/103 (23%)
FN3 756..850 CDD:238020 26/96 (27%)
FN3 858..954 CDD:238020 25/100 (25%)
FN3 959..1042 CDD:238020 27/84 (32%)
FN3 1057..1151 CDD:238020 10/94 (11%)
FN3 1156..1251 CDD:238020 12/94 (13%)
FN3 1258..1356 CDD:238020 24/100 (24%)
FN3 1361..1453 CDD:238020 23/102 (23%)
FN3 1464..1560 CDD:238020 27/139 (19%)
FN3 1572..1664 CDD:238020 18/99 (18%)
FN3 1679..1764 CDD:238020 13/84 (15%)
FN3 1774..1858 CDD:238020 13/83 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.