DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and CSF3R

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_724781.1 Gene:CSF3R / 1441 HGNCID:2439 Length:863 Species:Homo sapiens


Alignment Length:939 Identity:169/939 - (17%)
Similarity:306/939 - (32%) Gaps:324/939 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   632 LINMGDSIDLFCQIQKG----DRPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKT--SMISIPS 690
            ::::||.|...|.|::.    |...::.|....        ::||..|..|:|:.|  |:|::|.
Human    35 IVHLGDPITASCIIKQNCSHLDPEPQILWRLGA--------ELQPGGRQQRLSDGTQESIITLPH 91

  Fly   691 ASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 755
            .:........|:....:......|:|....||  .:..........:.:.:.|:.:..|:..:  
Human    92 LNHTQAFLSCCLNWGNSLQILDQVELRAGYPP--AIPHNLSCLMNLTTSSLICQWEPGPETHL-- 152

  Fly   756 KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQK----------------TNEGYYLCEAINGIG 804
                 .|....|..|...|.:. :|...:|.:.|                .|.|.:: :|.|.:|
Human   153 -----PTSFTLKSFKSRGNCQT-QGDSILDCVPKDGQSHCCIPRKHLLLYQNMGIWV-QAENALG 210

  Fly   805 SGLSAVIMISVQ-------------------APPE----------------FTEK--LRNQTARR 832
            :.:|..:.:...                   |||:                ..:|  ||:: .:|
Human   211 TSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLCWEPWQPGLHINQKCELRHK-PQR 274

  Fly   833 GEPA----------VLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILS---TGVMS---- 880
            ||.:          .||.|..|..|.                ..||::...:.   .|..|    
Human   275 GEASWALVGPLPLEALQYELCGLLPA----------------TAYTLQIRCIRWPLPGHWSDWSP 323

  Fly   881 SLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQ-PYDG 944
            ||.::.|||:.:...                       :..:..:.||.  |:|||.|.. |.:.
Human   324 SLELRTTERAPTVRL-----------------------DTWWRQRQLDP--RTVQLFWKPVPLEE 363

  Fly   945 NS-PLDRYIIEFKRSRASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAV- 1007
            :| .:..|::.::.|    .:...::...:|||.......|:....:.:||.|:.|||:.:..| 
Human   364 DSGRIQGYVVSWRPS----GQAGAILPLCNTTELSCTFHLPSEAQEVALVAYNSAGTSRPTPVVF 424

  Fly  1008 -----TIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKL-----SNTN 1062
                 ..:|...|.:..|.          ::.|.|:||  ..|.   .||.:.:.|     ||:|
Human   425 SESRGPALTRLHAMARDPH----------SLWVGWEPP--NPWP---QGYVIEWGLGPPSASNSN 474

  Fly  1063 SSYVFETINFITEEGKEHNLEL-QNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPS 1126
            .::..|      :.|:.....| :|:|.:..|.:::....:...|| |:....::.|..||..| 
Human   475 KTWRME------QNGRATGFLLKENIRPFQLYEIIVTPLYQDTMGP-SQHVYAYSQEMAPSHAP- 531

  Fly  1127 DTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRHYK---KTASSDTVLHGL 1188
            :.....:.....::.||..|.|.....:..|.:.      |.:...:.:.   ..:|...|||||
Human   532 ELHLKHIGKTWAQLEWVPEPPELGKSPLTHYTIF------WTNAQNQSFSAILNASSRGFVLHGL 590

  Fly  1189 KKYTNYTMQVLATTAGGDGVRSV-----------PIH---------------CQTE--------- 1218
            :..:.|.:.::|.:..|....:|           .:|               |.|.         
Human   591 EPASLYHIHLMAASQAGATNSTVLTLMTLTPEGSELHIILGLFGLLLLLTCLCGTAWLCCSPNRK 655

  Fly  1219 ----PDVPEAPTDVKALVMGNAAILVSWRP--------PAQPNGIITQYTVYSKAEGAETETKTQ 1271
                |.||: |..         :.|.||.|        |.|...:           |..:|....
Human   656 NPLWPSVPD-PAH---------SSLGSWVPTIMEELPGPRQGQWL-----------GQTSEMSRA 699

  Fly  1272 KVPH--YQMSFE-----------ATELEKNK----PYEFWVTAST-----------------TIG 1302
            ..||  .|.:|:           .|.||:::    |:|...::.|                 .:.
Human   700 LTPHPCVQDAFQLPGLGTPPITKLTVLEEDEKKPVPWESHNSSETCGLPTLVQTYVLQGDPRAVS 764

  Fly  1303 EGQQSKS----------IVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQP---EITWK 1354
            ...||:|          ::..|:...|......|.|          .|.||...|.|   |..| 
Human   765 TQPQSQSGTSDQVLYGQLLGSPTSPGPGHYLRCDST----------QPLLAGLTPSPKSYENLW- 818

  Fly  1355 IKGVEFSANDRMRVLPDGSLLIKSVNRQD 1383
                 |.|:      |.|:|:..:.:::|
Human   819 -----FQAS------PLGTLVTPAPSQED 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165 14/78 (18%)
IGc2 735..804 CDD:197706 13/84 (15%)
I-set 819..914 CDD:254352 21/129 (16%)
Ig 833..921 CDD:299845 16/104 (15%)
FN3 918..1011 CDD:238020 22/100 (22%)
FN3 1018..1116 CDD:238020 21/103 (20%)
FN3 1124..1217 CDD:238020 19/121 (16%)
FN3 1222..1312 CDD:238020 23/141 (16%)
Ig 1339..1406 CDD:299845 13/48 (27%)
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
CSF3RNP_724781.1 Lep_receptor_Ig 24..110 CDD:283889 17/82 (21%)
FN3 249..329 CDD:238020 17/96 (18%)
FN3 345..423 CDD:238020 21/83 (25%)
fn3 430..514 CDD:278470 20/104 (19%)
FN3 527..607 CDD:214495 17/86 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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