Sequence 1: | NP_001246162.1 | Gene: | Dscam1 / 35652 | FlyBaseID: | FBgn0033159 | Length: | 2038 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_031808.2 | Gene: | Csf3r / 12986 | MGIID: | 1339755 | Length: | 837 | Species: | Mus musculus |
Alignment Length: | 865 | Identity: | 164/865 - (18%) |
---|---|---|---|
Similarity: | 294/865 - (33%) | Gaps: | 259/865 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 632 LINMGDSIDLFCQI----QKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKT--SMISI-- 688
Fly 689 ------------------------------PSASPA------HTGRDTCIASNKAGTTTYSVDLT 717
Fly 718 VNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTL 782
Fly 783 HVDNIQKTNEGYYLC---EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQC---- 840
Fly 841 -EAKGEKPIGILWNMNNMRLDPKNDNRY-----TIREEILSTGVMSSLSIKRTERSD-------- 891
Fly 892 -SALFT----CVATNAFGS-DDASINMIVQEVPEMP-------YALKVLDKSGRSVQLSWAQPYD 943
Fly 944 GNSPLDRYIIEFKRSRASWSEIDRVIVPGH---------TTEAQVQKLSPATTYNIRIVAENAIG 999
Fly 1000 TSQSSEAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPP---PRTEWNGEILGYYVGYKLS-- 1059
Fly 1060 ---NTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTP 1121
Fly 1122 SQPPS---DTACTTLTSQTIRVGWV--SPPLESANGVIK-TYKVVYAPSDEWYDETKRHYKKTAS 1180
Fly 1181 ---SDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHCQT-EPDVPEAPTDVKALVMGNAAILVS 1241
Fly 1242 W-------------RPPAQPNGIITQY--TVYSKAEGAETETKTQKVPHYQMS-----FEATELE 1286
Fly 1287 KNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTFTAT------------------- 1332
Fly 1333 --FKEDAKMPCLAVGAPQPE 1350 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dscam1 | NP_001246162.1 | Ig | 38..130 | CDD:299845 | |
IG | 57..133 | CDD:214652 | |||
IG_like | 267..343 | CDD:214653 | |||
Ig | 269..340 | CDD:143165 | |||
IG_like | 353..425 | CDD:214653 | |||
IGc2 | 361..413 | CDD:197706 | |||
I-set | 433..527 | CDD:254352 | |||
IGc2 | 446..517 | CDD:197706 | |||
I-set | 533..618 | CDD:254352 | |||
IGc2 | 544..607 | CDD:197706 | |||
Ig | 641..714 | CDD:143165 | 19/116 (16%) | ||
IGc2 | 735..804 | CDD:197706 | 10/71 (14%) | ||
I-set | 819..914 | CDD:254352 | 21/118 (18%) | ||
Ig | 833..921 | CDD:299845 | 18/111 (16%) | ||
FN3 | 918..1011 | CDD:238020 | 29/108 (27%) | ||
FN3 | 1018..1116 | CDD:238020 | 19/105 (18%) | ||
FN3 | 1124..1217 | CDD:238020 | 22/101 (22%) | ||
FN3 | 1222..1312 | CDD:238020 | 18/109 (17%) | ||
Ig | 1339..1406 | CDD:299845 | 4/12 (33%) | ||
FN3 | 1409..1499 | CDD:238020 | |||
FN3 | 1504..1584 | CDD:238020 | |||
Dscam_C | 1890..2008 | CDD:289151 | |||
Csf3r | NP_031808.2 | Lep_receptor_Ig | 24..111 | CDD:399379 | 14/82 (17%) |
FN3 | 123..221 | CDD:419708 | 25/133 (19%) | ||
WSXWS motif | 319..323 | 0/3 (0%) | |||
FN3 | 354..426 | CDD:238020 | 25/84 (30%) | ||
FN3 | 433..524 | CDD:238020 | 20/106 (19%) | ||
FN3 | 530..611 | CDD:214495 | 22/94 (23%) | ||
Box 1 motif | 658..666 | 1/7 (14%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |