DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and dscaml1

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_004916122.1 Gene:dscaml1 / 100491996 XenbaseID:XB-GENE-922538 Length:2043 Species:Xenopus tropicalis


Alignment Length:2117 Identity:628/2117 - (29%)
Similarity:990/2117 - (46%) Gaps:230/2117 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 105
            |:.....:|.||::.|..|.|.|:|:|...:.|....|..:.|||.:|.:.::|.|...||....
 Frog    26 FVNTSLLQITFSSTVGVFIPCPAAGSPSATLRWYLGTGDDIYDVPHIRHVHANGTLQLYPFSPSA 90

  Fly   106 YRQEVHAQVYACLARNQFGSIISRDVHVRAVVSQHYEEDIHKAFVIRGNSAILKCDIPSFVADFV 170
            :...:|...|.|.|.|..|.|.|.::.|:||..:.|...:.....:||::|:.||..|..|.::|
 Frog    91 FNSFIHDNDYFCTAENSAGKIRSPNIRVKAVFREPYTVRVEDQRAMRGSAAVFKCLTPPSVQEYV 155

  Fly   171 NVISWHSDEKENFYPGTEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
            :|:||..|.     .....:|:::..|||.|:|.:|..||...:|:|.|:||.:||||.| ...|
 Frog   156 SVVSWEKDT-----VSLTSEGRFVTSPSGALYILDVQKEDALSTYRCITRHRYSGETRQS-NGAR 214

  Fly   236 LVITEPVGSVSPQLSGNGNQEHITLTRVPKMG-SVTLMCPAQAYPVPFFRWYKFIEGTTRKQAVV 299
            |::::|..||...|.|..:||.:       :| :|.|.|.|..||....||.|  :|    :.|.
 Frog   215 LLVSDPAESVPVLLDGFQSQEAL-------VGETVELPCIASGYPNLASRWIK--DG----RPVP 266

  Fly   300 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 364
            .:.|..:.|..|.:.|..:||||.|:|.:.||.|...|...|||..||...:.|.......|...
 Frog   267 SDSRWSKRSTGLSMADLRLEDSGTYICEITNSFGSAEVTGTLTVIEPLRVTLSPKKLKTGIGSTV 331

  Fly   365 VFTCQYTGNPIKTVSWMKDGKAI---------GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEA 420
            :.:|..:|:|...|.|.::.:.|         |.....|.|.|.:|...|.||||....:::|:.
 Frog   332 ILSCSLSGSPGYIVRWYRNTEHIEADEFISIRGADNETLVISSAQKSHSGAYQCFGTRKKQTAQD 396

  Fly   421 SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYV 485
            .|.:.|  ....|.|..:|.|:.|.||....|.|.|.|.|.|.|:|.||.:.|..:..::..||.
 Frog   397 FAIVVL--EDGTPRILSSFSEKVMNPGEQFSLMCSAKGAPPPTITWTLDDEPIQRDSGHRSNQYT 459

  Fly   486 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVT 550
            |.:|..|||:|::|....|||:|:|.|::.||.||:.|::||.|.|.||.|:....|||....:.
 Frog   460 TADGSTVSYMNVSSPQILDGGVYRCAARNSVGSAEYQARINVRGPPSIRPMKNLTAVAGRDSFIH 524

  Fly   551 CPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLE 615
            |.|.|||...|.|.:|:..||.|.:|.||.||||::.:|::..|:..|.|....|...|...|:.
 Frog   525 CRVIGYPYYFISWYKDSLLLPDNHRQVVFENGTLMLSDVQKGMDEGEYLCSVLIQPQLSISQSVH 589

  Fly   616 VQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQMRTNRIS 680
            |.|.|.|.|.||.:.. .::|..:.:.|.:..||.||::.|   |..|..   .|.....|....
 Frog   590 VTVKVPPLIQPFEFPP-ASIGQLLYIPCVVSSGDMPIRITW---RKDGQV---IVSGSGITIETK 647

  Fly   681 EKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKA 745
            |..|.:.|.|.|..|.|..||||||.|.|.:....|.|.||||::::|.::....|....:.|..
 Frog   648 EFMSSLQISSVSLKHNGNYTCIASNDAATVSRERQLIVRVPPRFVVQPNNQDGIYGKAGVLNCSV 712

  Fly   746 DGFPKPQVTWKKAVGD-TPGEYKDLKKSDNIRV-EEGTLHVDNIQKTNEGYYLCEAINGIGSGLS 808
            ||:|.|:|.||.|.|. .|.:|..:..:..|:: ...:|.:.::.:.:.|||||:|.||:|:.:|
 Frog   713 DGYPPPKVVWKHAKGSGNPQQYHPVPLTGRIQILPNSSLLIRHVLEEDIGYYLCQASNGVGTDIS 777

  Fly   809 AVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEI 873
            ..:.::|:.|...|.......|.:|:...|.|.|:||:||.|.|...:..:||..:.||.|..:.
 Frog   778 KSMFLTVKIPAMITSHPNTTIAIKGQTKGLNCTARGERPIIIRWEKGDTVIDPDRNLRYLIATKD 842

  Fly   874 LSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSW 938
            ....|:|:|::|..||.||..|:|.|.|::|.|...|.:.|||.|:.| .|:|.:...||:.|.|
 Frog   843 SGDEVISTLTLKPAERGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPP-ELEVREVKARSMNLRW 906

  Fly   939 AQPYDGNSPLDRYIIEFKRSRASW--SEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTS 1001
            .|.:||||.:..:.||:|....||  .:..|.|.| ...:|.:..|.||:.|:||:.:.|.||.|
 Frog   907 TQRFDGNSIITAFDIEYKNKSDSWEFKQSTRNISP-IINQANIVDLHPASVYSIRMYSFNKIGRS 970

  Fly  1002 QSSEAVTIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYV 1066
            :.|:.:||.|.|.||.|.|.::.::|:...:::||||.|.:...||.|.||.:||:.:...|:..
 Frog   971 EPSKELTISTEEAAPDGPPMDVTLQPLTSQSIQVTWKAPRKELQNGVIRGYQIGYRENGPGSNGQ 1035

  Fly  1067 FETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACT 1131
            :..:. :...|......|.|::.:.||.||:||||:.|.||.|.|....|.|..||:||.:....
 Frog  1036 YSIVE-MKATGDAEVYTLDNMKKFAQYGVVVQAFNRAGTGPSSTEINATTLEDVPSKPPENVRVL 1099

  Fly  1132 TLTSQTIRVGWVSPPLESANGVIKTYKVVY---APSDEWYDETKRHYKKTASSDTVLHGLKKYTN 1193
            ::||....:.|..||..|.|||:|.|:|::   .|..||   .:.....|......|..|:|:|:
 Frog  1100 SITSDVAVISWSEPPRNSLNGVLKGYRVIFWSLYPDGEW---GEMQNITTPRERVELKSLEKFTD 1161

  Fly  1194 YTMQVLATTAGGDGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVY 1258
            |::||||.|..||||||..::.||:.|:|..|..:||:...:::::|||.||.:|||||.:||::
 Frog  1162 YSVQVLAYTQAGDGVRSDVLYLQTKEDIPGPPAGIKAVSSSSSSVVVSWLPPTKPNGIIRKYTIF 1226

  Fly  1259 SKAEG------AETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQ 1317
            ..:.|      :|.||..:.: ||::    ..|.:.:.|..||.|.|:.|.|..|:.::..|:.:
 Frog  1227 CSSPGSGQPAPSEYETSPEFL-HYRI----MHLLRGQQYMLWVAAVTSAGRGNFSEKVMIEPAGK 1286

  Fly  1318 VPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITWKIKGVEFS----ANDRMRVL-PDGSLLIK 1377
            .||||.||..|.:..:.:|.::||.:||.|.|.|.| .|..|.|    |.|..|:: .:|:|.::
 Frog  1287 APAKIISFGGTVSTPWMKDVRLPCSSVGEPAPAIKW-TKDSEDSAIPVALDGHRLIHSNGTLTLR 1350

  Fly  1378 SVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSPHVTLSATTTDALTVKLKPHEGDTAPLHGY 1442
            ||..:|:|.|:|.|.|:...|:|...|:|..||..|.:|:|.|:..::|:...|.:...:.:.|:
 Frog  1351 SVKAEDSGYYTCTATNTWGFDTIIVNLLVQVPPDQPRLTVSKTSASSITLAWIPGDNGGSSIRGF 1415

  Fly  1443 TLHYKPEFG-EWETSEVSVDSQKHNIEGLLCGSRYQVYATGFNNIGAGEASDILNTRTKGQKPKL 1506
            .|.|..:.. ||....:|...:...:|.|.||:.|:|.....|::|||..|:|:..:|.|::|..
 Frog  1416 VLQYSVDNSEEWRDVFISSSERSFRLENLRCGTWYKVKLAAKNSVGAGRISEIIEAKTHGREPSF 1480

  Fly  1507 -PEKPRFIEVSSNSVSLHFKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVKPDNNYVVLDLEPA 1570
             .::|.|..|:|....|:...|..||||::..::|.:.::...|..:..||..|  ..:.:|..|
 Frog  1481 NKDQPLFTHVNSTHARLNLHGWNSGGCPITSVILEYRPQNTWPWQSLRANVTSD--VFLTELREA 1543

  Fly  1571 TWYNLRITAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRLPAWMPEWLDLNFMVP 1635
            |||.|::.|.||||.......||||...|.||.|:....|.|:               |:..:..
 Frog  1544 TWYELKMRACNSAGCGNETSRFATLDYDGSTIPPIKSAQGEGD---------------DVKKLFS 1593

  Fly  1636 LIATVVVVAVGICVVCVALSRRRAD------------DMRGGQKDVYYDV-VYNQTMGPGATLDK 1687
            :.:.|::..:|:.::.:...:|:..            :|...:.:..:|. |.....||...:|.
 Frog  1594 IASPVILATLGVALLFIIRKKRKEKRLKRLRDAKSLAEMLISKNNRSFDTPVKGPPAGPRLHIDI 1658

  Fly  1688 RRPDL----RDELGYIAPPNRKLPPVPGSNYNT-------CDRIKRGRGGLRSN------HSTWD 1735
            .|..|    ::.:..:|..::...||..:.::.       |..:......|..|      .|...
 Frog  1659 PRVQLLIEDKEGVKQLAGDDKATLPVTDAEFSQTVNPQSFCTGVSLHHPALIQNTGPLIDMSDIR 1723

  Fly  1736 PRRNPNLYEELKAPPVPMHG--NHYGHAHGNAECHYRHPGMEDEICPYATFHLLGFREEMDPTKA 1798
            |..||...:.:|:    .|.  |.|.......:|....|..                     |..
 Frog  1724 PGTNPVSRKSVKS----AHSTRNRYSSQWTLTKCQSSTPAR---------------------TLT 1763

  Fly  1799 MNFQTFPHQNGHAGPVPGHAGTMLPPGHPGHVHSRSGSQSMPRANRYQRKN--SQGGQSSIYTPA 1861
            .:::|...|:|..                 ...|.|.|.|:.:.....|.:  |....||.|...
 Frog  1764 SDWRTVGSQHGIT-----------------VTESDSYSASLSQDTDKGRNSMVSTESASSTYEEL 1811

  Fly  1862 PEYDDPANCAEEDQYRRY----------------TRVNSQGGSL---------------YSGPGP 1895
            ....:.|...|:.|:.::                |..|..|.|:               .|.|.|
 Frog  1812 ARAYEHAKLEEQLQHAKFEITECFISDSSSDQMTTGTNENGDSMTSMSTPSEPGICRFTASPPKP 1876

  Fly  1896 EYDDPAN--CAPEEDQYGSQY--------GGPYGQPYDHYGSRGSMGRRSIGSARNPGNG----- 1945
            :..||..  ..|...:..|:|        ..|:.:..|.:.|...:..|. .|.||....     
 Frog  1877 QDSDPTKNVAVPIPHRAKSEYCNLPLYMKSEPHFRKPDPHDSCPVVPPRE-ASMRNLNRSYHSRH 1940

  Fly  1946 ---SPEPPPPPPRNHDMSNSSFNDSKESNEISEAECDRDHGPRGNYGAVKRSPQP-----KDQRT 2002
               .|...|||..:|. :.|..:..:.:..::.|.......|.....:....|.|     :::..
 Frog  1941 LTLEPGAKPPPGLSHP-TPSGVSLPQRTLLLAGASASAPSAPAATAPSAPADPTPSVGPVENRLP 2004

  Fly  2003 TEEMR------KLIERNETGPKQLQLQQANGAGFTAY 2033
            |:..:      .|:|.:.:|..:.|.|   |||  ||
 Frog  2005 TQHSKMGGSRDSLLEMSSSGGSRAQKQ---GAG--AY 2036

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 28/88 (32%)
IG 57..133 CDD:214652 23/75 (31%)
IG_like 267..343 CDD:214653 27/76 (36%)
Ig 269..340 CDD:143165 25/70 (36%)
IG_like 353..425 CDD:214653 20/80 (25%)
IGc2 361..413 CDD:197706 17/60 (28%)
I-set 433..527 CDD:254352 38/93 (41%)
IGc2 446..517 CDD:197706 28/70 (40%)
I-set 533..618 CDD:254352 32/84 (38%)
IGc2 544..607 CDD:197706 24/62 (39%)
Ig 641..714 CDD:143165 25/72 (35%)
IGc2 735..804 CDD:197706 23/70 (33%)
I-set 819..914 CDD:254352 32/94 (34%)
Ig 833..921 CDD:299845 34/87 (39%)
FN3 918..1011 CDD:238020 35/94 (37%)
FN3 1018..1116 CDD:238020 32/97 (33%)
FN3 1124..1217 CDD:238020 34/95 (36%)
FN3 1222..1312 CDD:238020 31/95 (33%)
Ig 1339..1406 CDD:299845 27/71 (38%)
FN3 1409..1499 CDD:238020 26/90 (29%)
FN3 1504..1584 CDD:238020 25/80 (31%)
Dscam_C 1890..2008 CDD:289151 26/146 (18%)
dscaml1XP_004916122.1 Ig 42..113 CDD:319273 22/70 (31%)
Ig 128..217 CDD:386229 33/94 (35%)
I-set 232..310 CDD:369462 29/90 (32%)
IG_like 328..388 CDD:214653 17/59 (29%)
Ig_3 407..488 CDD:372822 33/80 (41%)
Ig 504..574 CDD:386229 28/69 (41%)
Ig 614..680 CDD:319273 25/71 (35%)
Ig_DSCAM 706..784 CDD:143211 24/77 (31%)
Ig 802..890 CDD:386229 34/87 (39%)
FN3 886..980 CDD:238020 35/95 (37%)
FN3 987..1084 CDD:238020 32/97 (33%)
FN3 1092..1185 CDD:238020 34/95 (36%)
FN3 1190..1281 CDD:238020 31/95 (33%)
IGc2 1305..1369 CDD:197706 25/64 (39%)
FN3 1383..1473 CDD:238020 25/89 (28%)
FN3 1487..1563 CDD:238020 25/77 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 137 1.000 Domainoid score I4848
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H79549
Inparanoid 1 1.050 965 1.000 Inparanoid score I326
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9434
Panther 1 1.100 - - O PTHR10075
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1391
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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